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References from SFUMATO: Bayesian probabilistic clustering for uncertainty-aware spatial transcriptomics analysis and mapping. Local targets link to admitted publications; unresolved targets remain external evidence.
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Automated identification of the mouse brain’s spatial compartments from in situ sequencing data
10.1186/s12915-020-00874-5 · 2020 · External reference
10.21105/joss.00861
10.21105/joss.00861 · External reference
FICTURE: scalable segmentation-free analysis of subcellular spatial transcriptomics
10.1038/s41592-024-02415-2 · 2024 · External reference
Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease
10.1038/s41467-023-40156-6 · 2023 · External reference
Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST
10.1038/s41467-023-36796-3 · 2023 · External reference
Nonnegative spatial factorization
2024 · External reference
spage2vec: Unsupervised representation of localized spatial gene expression signatures
2022 · External reference
Points2Regions: Fast, interactive clustering of imaging-based spatial transcriptomics data
10.1002/cyto.a.24884 · 2024 · External reference
Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows
10.1038/s41592-025-02617-2 · 2025 · External reference
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10.1016/j.heliyon.2023.e15306
10.1016/j.heliyon.2023.e15306 · External reference
Procédé mécanique pour déterminer la composition des roches
1847 · External reference
Correction of area fraction measurements using the Delesse principle in biological tissues
2020 · External reference
10.1137/090771806.0909.4061
10.1137/090771806.0909.4061 · External reference
10.1016/j.patcog.2011.04.006
10.1016/j.patcog.2011.04.006 · External reference
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10.1371/journal.pone.0199239
10.1371/journal.pone.0199239 · External reference
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High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis
10.1038/s41467-023-43458-x · 2023 · External reference
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