Research graph
References from EXCON: a scalable, reproducible Nextflow pipeline for CAFE-based gene EXpansion and CONtraction analysis. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
External reference
10.1126/science.290.5494.1151
10.1126/science.290.5494.1151 · External reference
10.1038/nature07529
10.1038/nature07529 · External reference
10.1073/pnas.1503926112
10.1073/pnas.1503926112 · External reference
10.1093/bioinformatics/btaa1022
10.1093/bioinformatics/btaa1022 · External reference
10.1101/gr.3567505
10.1101/gr.3567505 · External reference
10.1093/bioinformatics/btl097
10.1093/bioinformatics/btl097 · External reference
10.1371/journal.pone.0000085
10.1371/journal.pone.0000085 · External reference
10.1534/genetics.107.080077
10.1534/genetics.107.080077 · External reference
10.1371/journal.pgen.0030197
10.1371/journal.pgen.0030197 · External reference
10.1093/gbe/evab261
10.1093/gbe/evab261 · External reference
10.1038/s41467-024-48643-0
10.1038/s41467-024-48643-0 · External reference
10.1038/s41586-025-08619-6
10.1038/s41586-025-08619-6 · External reference
Practical Computational Reproducibility in the Life Sciences
10.1016/j.cels.2018.03.014 · 2018 · External reference
10.1038/nbt.3820
10.1038/nbt.3820 · External reference
10.1038/s41587-020-0439-x
10.1038/s41587-020-0439-x · External reference
10.1186/s13059-025-03673-9
10.1186/s13059-025-03673-9 · External reference
10.1101/2021.06.03.446934
10.1101/2021.06.03.446934 · External reference
10.1186/s13059-019-1832-y
10.1186/s13059-019-1832-y · External reference
10.1101/2025.07.15.664860
10.1101/2025.07.15.664860 · External reference
10.18129/b9.bioc.topgo
10.18129/b9.bioc.topgo · External reference
10.1093/nar/gkv1189
10.1093/nar/gkv1189 · External reference
10.5281/zenodo.8192486
10.5281/zenodo.8192486 · External reference
10.1093/bioinformatics/btv351
10.1093/bioinformatics/btv351 · External reference
10.1093/bioinformatics/btt086
10.1093/bioinformatics/btt086 · External reference
10.5281/zenodo.18230424
10.5281/zenodo.18230424 · External reference
10.64898/2026.08.20.745971
10.64898/2026.08.20.745971 · External reference
10.1111/mec.15401
10.1111/mec.15401 · External reference
Comparative genomic analysis reveals contraction of gene families with putative roles in pathogenesis in the fungal boxwood pathogens Calonectria henricotiae and C. pseudonaviculata
10.1186/s12862-022-02035-4 · 2022 · External reference
GFF Utilities: GffRead and GffCompare
10.12688/f1000research.23297.1 · 2020 · External reference
10.1038/s41592-021-01101-x
10.1038/s41592-021-01101-x · External reference
10.1093/nar/30.7.1575
10.1093/nar/30.7.1575 · External reference
10.1093/molbev/mst010
10.1093/molbev/mst010 · External reference
10.1038/s41467-022-34630-w
10.1038/s41467-022-34630-w · External reference
10.1371/journal.pone.0009490
10.1371/journal.pone.0009490 · External reference
10.1093/bioinformatics/btu033
10.1093/bioinformatics/btu033 · External reference
10.1093/bioinformatics/bty633
10.1093/bioinformatics/bty633 · External reference
10.1038/s41586-021-04341-1
10.1038/s41586-021-04341-1 · External reference
Completing a molecular timetree of primates
10.3389/fbinf.2024.1495417 · 2024 · External reference
10.1016/j.cell.2024.01.052
10.1016/j.cell.2024.01.052 · External reference
10.1093/molbev/msy042
10.1093/molbev/msy042 · External reference
Unresolved reference
External reference
