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References from Ultrafast and Accurate Selection of High-Quality Protein Complex Models from Large-Scale Prediction. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/s41586-021-03819-2
10.1038/s41586-021-03819-2 · External reference
10.1101/2021.10.04.463034
10.1101/2021.10.04.463034 · External reference
10.1038/s41586-024-07487-w
10.1038/s41586-024-07487-w · External reference
10.64898/2026.02.05.703733
10.64898/2026.02.05.703733 · External reference
10.1101/2025.06.14.659707
10.1101/2025.06.14.659707 · External reference
10.1101/2024.10.10.615955
10.1101/2024.10.10.615955 · External reference
Model quality assessment for CASP16
10.1002/prot.70037 · 2026 · External reference
Highlights of model quality assessment in CASP16
10.1002/prot.70035 · 2026 · External reference
Assessment of the assessment—All about complexes
10.1002/prot.26612 · 2023 · External reference
Improved protein structure refinement guided by deep learning based accuracy estimation
10.1038/s41467-021-21511-x · 2021 · External reference
VoroIF-GNN: Voronoi tessellation-derived protein–protein interface assessment using a graph neural network
10.1002/prot.26554 · 2023 · External reference
10.1093/bioinformatics/btac056
10.1093/bioinformatics/btac056 · External reference
10.1093/bib/bbac507
10.1093/bib/bbac507 · External reference
10.1093/bioinformatics/btad591
10.1093/bioinformatics/btad591 · External reference
Prediction and quality assessment of protein quaternary structure models using the MultiFOLD2 and ModFOLDdock2 servers
10.1093/nar/gkaf336 · 2025 · External reference
10.1093/nar/gkx332
10.1093/nar/gkx332 · External reference
10.1093/nar/gkab321
10.1093/nar/gkab321 · External reference
10.1093/nar/gkad297
10.1093/nar/gkad297 · External reference
10.1093/bioinformatics/btq058
10.1093/bioinformatics/btq058 · External reference
Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15
10.1038/s42003-023-05525-3 · 2023 · External reference
Boosting AlphaFold protein tertiary structure prediction through MSA engineering and extensive model sampling and ranking in CASP16
10.1038/s42003-025-08960-6 · 2025 · External reference
Prediction of protein assemblies by structure sampling followed by interface-focused scoring
10.1002/prot.26569 · 2023 · External reference
DeepUMQA-X: Comprehensive and insightful estimation of model accuracy for protein single-chain and complex
10.1093/nar/gkaf380 · 2025 · External reference
Recent advances and challenges in protein complex model accuracy estimation
10.1016/j.csbj.2024.04.049 · 2024 · External reference
MassiveFold: unveiling AlphaFold’s hidden potential with optimized and parallelized massive sampling
10.1038/s43588-024-00714-4 · 2024 · External reference
MassiveFold Data for CASP16-CAPRI: A Systematic Massive Sampling Experiment
10.1002/prot.70040 · 2026 · External reference
Scoring function for automated assessment of protein structure template quality
10.1002/prot.20264 · 2004 · External reference
10.1371/journal.pone.0161879
10.1371/journal.pone.0161879 · External reference
10.1093/bioinformatics/btt473
10.1093/bioinformatics/btt473 · External reference
Assessment of protein model structure accuracy estimation in CASP14: Old and new challenges
10.1002/prot.26192 · 2021 · External reference
Assessment of protein model structure accuracy estimation in CASP13: challenges in the era of deep learning
10.1002/prot.25804 · 2019 · External reference
US-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexes
10.1038/s41592-022-01585-1 · 2022 · External reference
10.1002/jcc.20681
10.1002/jcc.20681 · External reference
Efficient global accuracy estimation for protein complex structural models using multi-view representation learning
10.1016/j.crmeth.2026.101312 · 2026 · External reference
10.64898/2026.04.15.718808
10.64898/2026.04.15.718808 · External reference
10.1016/j.sbi.2023.102757
10.1016/j.sbi.2023.102757 · External reference
Modeling Alternative Conformational States in CASP16
10.1002/prot.70065 · 2026 · External reference
10.1002/pro.3330
10.1002/pro.3330 · External reference
The Rosetta all-atom energy function for macromolecular modeling and design
10.1021/acs.jctc.7b00125 · 2017 · External reference
Scoring function for automated assessment of protein structure template quality
10.1002/prot.20264 · 2004 · External reference
10.1093/bioinformatics/btt473
10.1093/bioinformatics/btt473 · External reference
10.1093/bib/bbaf616
10.1093/bib/bbaf616 · External reference
ORIGAMI: Orientation-Aware Graph Neural Network for Assessing Multimeric Interfaces of Protein Complex Structures
10.1021/acs.jcim.6c00988 · 2026 · External reference
Modeling protein quaternary structure of homo-and hetero-oligomers beyond binary interactions by homology
10.1038/s41598-017-09654-8 · 2017 · External reference
10.1093/nar/gkg571
10.1093/nar/gkg571 · External reference
10.1371/journal.pone.0161879
10.1371/journal.pone.0161879 · External reference
Assessment of the assessment—All about complexes
10.1002/prot.26612 · 2023 · External reference
Assessment of protein assembly prediction in CASP12
10.1002/prot.25408 · 2018 · External reference
Model quality assessment for CASP16
10.1002/prot.70037 · 2026 · External reference