Research graph
References from Auditing Protein-Protein Interaction Signals with Sparse Autoencoder Fingerprints. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1021/acs.chemrev.5b00683
10.1021/acs.chemrev.5b00683 · External reference
10.7554/elife.03430
10.7554/elife.03430 · External reference
10.1126/science.adt1630
10.1126/science.adt1630 · External reference
10.1126/science.ade2574
10.1126/science.ade2574 · External reference
10.64898/2026.06.03.729735
10.64898/2026.06.03.729735 · External reference
D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions
10.1016/j.cels.2021.08.010 · 2021 · External reference
Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models
10.1038/s42256-024-00940-5 · 2024 · External reference
PLM-interact: extending protein language models to predict protein-protein interactions
10.1038/s41467-025-64512-w · 2025 · External reference
A paired sequence language model for protein-protein interaction modeling
10.1038/s41467-026-70457-5 · 2026 · External reference
A flaw in using pretrained protein language models in protein–protein interaction inference models
10.1038/s42256-025-01176-7 · 2026 · External reference
PRING: Rethinking Protein-Protein Interaction Prediction from Pairs to Graphs
2025 · External reference
Linear-time prediction of proteome-scale microbial protein interactions
10.1073/pnas.2610619123 · 2026 · External reference
10.1038/s41467-025-67971-3
10.1038/s41467-025-67971-3 · External reference
eSIG-Net: an interaction language model that decodes the protein code of single mutations
10.1038/s41592-026-03086-x · 2026 · External reference
10.1038/nmeth.2259
10.1038/nmeth.2259 · External reference
10.1093/bioinformatics/btac429
10.1093/bioinformatics/btac429 · External reference
10.1093/bib/bbae076
10.1093/bib/bbae076 · External reference
10.1186/1471-2105-7-s1-s2
10.1186/1471-2105-7-s1-s2 · External reference
Protein language models are accidental taxonomists
10.1186/s12859-026-06491-3 · 2026 · External reference
10.1073/pnas.2506316122
10.1073/pnas.2506316122 · External reference
InterPLM: discovering interpretable features in protein language models via sparse autoencoders
10.1038/s41592-025-02836-7 · 2025 · External reference
10.1145/2939672.2939785
10.1145/2939672.2939785 · External reference
10.1038/s41586-024-08328-6
10.1038/s41586-024-08328-6 · External reference
Unresolved reference
External reference
10.1145/2339530.2339556
10.1145/2339530.2339556 · External reference
