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References from Whole-genome characterization of Plasmodium falciparum population structure and drug resistance across Uganda and neighboring countries. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1186/s12936-026-05836-w
10.1186/s12936-026-05836-w · External reference
10.4269/ajtmh.14-0312
10.4269/ajtmh.14-0312 · External reference
Associations between environmental covariates and temporal changes in malaria incidence in high transmission settings of Uganda: a distributed lag nonlinear analysis
10.1186/s12889-021-11949-5 · 2021 · External reference
10.1038/s41579-024-01008-2
10.1038/s41579-024-01008-2 · External reference
Indigenous emergence and spread of kelch13 C469Y artemisinin-resistant Plasmodium falciparum in Uganda
2024 · External reference
10.1056/nejmoa2211803)
10.1056/nejmoa2211803) · External reference
Mapping Plasmodium falciparum mutations in Africa: A critical review of emerging drug resistance and implications for malaria control
10.1016/j.ijid.2025.108033 · 2025 · External reference
Sustained high prevalence of multiple antimalarial drug resistance markers in Uganda in 2023–2024
2026 · External reference
Plasmodium falciparum Kelch-13 artemisinin partial resistance markers in Fort Portal, Western Uganda, 2024
2025 · External reference
10.1038/s41598-024-67623-4
10.1038/s41598-024-67623-4 · External reference
10.1016/j.ajhg.2010.02.021
10.1016/j.ajhg.2010.02.021 · External reference
10.1371/journal.pgen.1007279
10.1371/journal.pgen.1007279 · External reference
10.1371/journal.pgen.1007065
10.1371/journal.pgen.1007065 · External reference
10.1038/s41576-021-00349-5
10.1038/s41576-021-00349-5 · External reference
Genetic diversity and genetic relatedness in Plasmodium falciparum parasite population in individuals with uncomplicated malaria based on microsatellite typing in Eastern and Western regions of Uganda, 2019-2020
10.1186/s12936-021-03763-6 · 2021 · External reference
10.1186/s12936-025-05325-6
10.1186/s12936-025-05325-6 · External reference
Imported malaria predominates in near-elimination settings in Southwestern Uganda
10.1371/journal.pgph.0005951 · 2026 · External reference
10.64898/2026.05.05.722990
10.64898/2026.05.05.722990 · External reference
10.1038/s41591-026-04590-5
10.1038/s41591-026-04590-5 · External reference
10.1038/s41467-024-46659-0
10.1038/s41467-024-46659-0 · External reference
10.1016/s1473-3099(18)30068-9
10.1016/s1473-3099(18)30068-9 · External reference
10.1016/s1473-3099(17)30048-8
10.1016/s1473-3099(17)30048-8 · External reference
10.1093/infdis/jiu491
10.1093/infdis/jiu491 · External reference
The impact of antimalarial resistance on the genetic structure of Plasmodium falciparum in the DRC
10.1038/s41467-020-15779-8 · 2020 · External reference
hmmibd-rs: an enhanced hmmIBD implementation for parallelizable identity-by-descent detection from large-scale Plasmodium genomic data
10.1186/s12936-026-05814-2 · 2026 · External reference
Uniform manifold approximation and projection
10.1038/s43586-024-00363-x · 2024 · External reference
10.32614/cran.package.uwot
10.32614/cran.package.uwot · External reference
10.1038/ng.3189
10.1038/ng.3189 · External reference
10.1371/journal.pbio.0040072
10.1371/journal.pbio.0040072 · External reference
10.1093/bioinformatics/bts115
10.1093/bioinformatics/bts115 · External reference
10.1016/s1473-3099(24)00362-1
10.1016/s1473-3099(24)00362-1 · External reference
10.1111/mec.15000
10.1111/mec.15000 · External reference
Differentiation measures for conservation genetics
10.1111/eva.12590 · 2018 · External reference
10.1534/genetics.119.302120
10.1534/genetics.119.302120 · External reference
10.1111/mec.12099
10.1111/mec.12099 · External reference
Quantifying the Role of Importation on Sustained Malaria Transmission in a Low-to-Moderate Burden Region of Southwest Uganda
10.1093/infdis/jiag008 · 2026 · External reference
10.1038/s41467-023-39417-1
10.1038/s41467-023-39417-1 · External reference
10.1186/s12936-017-1812-1
10.1186/s12936-017-1812-1 · External reference
10.1093/infdis/jiae288
10.1093/infdis/jiae288 · External reference
Genomic Surveillance of Plasmodium falciparum Drug Resistance Markers Between October 2021 and June 2023 in Kigali, Rwanda
10.3390/pathogens14111092 · 2025 · External reference
Multiple local PfDHFR I164L haplotype expansions drive Plasmodium falciparum antifolate resistance in Uganda
10.1038/s41467-026-76826-4 · 2026 · External reference
10.1186/s12936-019-3057-7
10.1186/s12936-019-3057-7 · External reference
10.1128/aac.00498-09
10.1128/aac.00498-09 · External reference
High-level Plasmodium falciparum sulfadoxine-pyrimethamine resistance with the concomitant occurrence of septuple haplotype in Tanzania
10.1186/s12936-015-0977-8 · 2015 · External reference
10.12688/verixiv.3683.1
10.12688/verixiv.3683.1 · External reference
Genetic diversity and population structure of Plasmodium falciparum in Kenyan-Ugandan border areas
10.1111/tmi.13223 · 2019 · External reference
Global-scale population genetic analysis of Plasmodium falciparum identifies region-specific patterns of malaria parasite adaptation
10.1038/s41467-026-73006-2 · 2026 · External reference
Pf8: an open dataset of Plasmodium falciparum genome variation in 33,325 worldwide samples
10.12688/wellcomeopenres.24031.1 · 2025 · External reference
10.1086/587845
10.1086/587845 · External reference
10.1371/journal.pbio.2005712
10.1371/journal.pbio.2005712 · External reference
10.7554/elife.77634)
10.7554/elife.77634) · External reference
Biochemical and functional characterization of Plasmodium falciparum GTP cyclohydrolase I
10.1186/1475-2875-13-150 · 2014 · External reference
10.1371/journal.pgen.1009268
10.1371/journal.pgen.1009268 · External reference
Malaria Prevention Strategies in South Sudan
2020 · External reference
10.1038/s41598-025-94716-5
10.1038/s41598-025-94716-5 · External reference
10.1186/s12936-025-05441-3
10.1186/s12936-025-05441-3 · External reference
10.1128/aac.05141-14
10.1128/aac.05141-14 · External reference
10.1371/journal.pmed.1001788
10.1371/journal.pmed.1001788 · External reference
10.1186/s12936-016-1641-7
10.1186/s12936-016-1641-7 · External reference
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Trimmomatic: a decade of feature-rich, high-performance NGS read preprocessing
10.1093/bioinformatics/btag331 · 2026 · External reference
10.48550/arxiv.1303.3997
10.48550/arxiv.1303.3997 · External reference
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10.1093/bioinformatics/btx699
10.1093/bioinformatics/btx699 · External reference
An optimized GATK4 pipeline for Plasmodium falciparum whole genome sequencing variant calling and analysis
10.1186/s12936-023-04632-0 · 2023 · External reference
10.1101/201178
10.1101/201178 · External reference
10.1093/bioinformatics/btq033
10.1093/bioinformatics/btq033 · External reference
10.1093/gigascience/giab008
10.1093/gigascience/giab008 · External reference
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10.5281/zenodo.13772087
10.5281/zenodo.13772087 · External reference
10.1093/bioinformatics/btr330
10.1093/bioinformatics/btr330 · External reference
10.1186/s13742-015-0047-8
10.1186/s13742-015-0047-8 · External reference
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10.1111/2041-210x.12382
10.1111/2041-210x.12382 · External reference
10.1186/s12936-018-2349-7
10.1186/s12936-018-2349-7 · External reference
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