Research graph
References from Systematic exploration of predicted quaternary structures within pandemic-relevant viral proteomes. Local targets link to admitted publications; unresolved targets remain external evidence.
“Flavivirus NS1 Structures Reveal Surfaces for Associations with Membranes and the Immune System.” Science (New York
10.1126/science.1247749 · 2014 · External reference
10.1128/jvi.73.9.7710-7721.1999
10.1128/jvi.73.9.7710-7721.1999 · External reference
10.1074/jbc.m112.407429
10.1074/jbc.m112.407429 · External reference
10.1038/nrmicro3046
10.1038/nrmicro3046 · External reference
AlphaFold Protein Structure Database 2025: A Redesigned Interface and Updated Structural Coverage
10.1093/nar/gkaf1226 · 2026 · External reference
Positive-Strand RNA Virus Genome Replication Organelles: Structure, Assembly, Control
10.1016/j.tig.2024.04.003 · 2024 · External reference
10.1093/nar/gky949
10.1093/nar/gky949 · External reference
10.1099/jgv.0.001072
10.1099/jgv.0.001072 · External reference
10.1101/2024.07.30.605881
10.1101/2024.07.30.605881 · External reference
10.1093/nar/gkad946
10.1093/nar/gkad946 · External reference
10.64898/2026.03.11.711233
10.64898/2026.03.11.711233 · External reference
Crystal Structure of the Human Adenovirus Proteinase with Its 11 Amino Acid Cofactor
10.1002/j.1460-2075.1996.tb00526.x · 1996 · External reference
Unresolved reference
External reference
10.1101/2021.10.04.463034
10.1101/2021.10.04.463034 · External reference
10.7554/elife.83605
10.7554/elife.83605 · External reference
10.1093/nar/gku981
10.1093/nar/gku981 · External reference
10.1038/s41556-024-01522-8
10.1038/s41556-024-01522-8 · External reference
10.1093/nar/gku1121
10.1093/nar/gku1121 · External reference
10.1101/2025.06.17.659504
10.1101/2025.06.17.659504 · External reference
10.64898/2026.03.27.714458
10.64898/2026.03.27.714458 · External reference
10.1093/nar/gkh052
10.1093/nar/gkh052 · External reference
“Computed Structures of Core Eukaryotic Protein Complexes.”
10.1126/science.abm4805 · 2021 · External reference
10.1080/10409238.2016.1215406
10.1080/10409238.2016.1215406 · External reference
10.1038/s41586-021-03819-2
10.1038/s41586-021-03819-2 · External reference
RNA Viruses: A Case Study of the Biology of Emerging Infectious Diseases
2013 · External reference
GPU-Accelerated Homology Search with MMseqs2
10.1038/s41592-025-02819-8 · 2025 · External reference
10.1126/sciadv.aeb0455
10.1126/sciadv.aeb0455 · External reference
10.1093/nar/gkae1119
10.1093/nar/gkae1119 · External reference
10.64898/2026.09.16.752260 · Admitted local publication
Rapid and Sensitive Protein Complex Alignment with Foldseek-Multimer
10.1038/s41592-025-02593-7 · 2025 · External reference
10.1016/j.cell.2019.08.005
10.1016/j.cell.2019.08.005 · External reference
Structural Definition of Pseudorabies Virus dUTPase Reveals a Novel Folding Dimer in the Herpesvirus Family
2024 · External reference
Cryo-EM Structure of the Vaccinia Virus Entry Fusion Complex Reveals a Multicomponent Fusion Machinery
10.1126/sciadv.aec0254 · 2026 · External reference
10.1038/s41586-020-2443-1
10.1038/s41586-020-2443-1 · External reference
10.1101/2024.04.29.591684
10.1101/2024.04.29.591684 · External reference
10.1038/s44320-025-00147-9
10.1038/s44320-025-00147-9 · External reference
10.1073/pnas.0508531102
10.1073/pnas.0508531102 · External reference
10.1146/annurev-virology-100424-122154
10.1146/annurev-virology-100424-122154 · External reference
Structure and Immunogenicity of an Engineered Soluble Prefusion-Stabilized EBV gB Antigen
10.1038/s41467-025-67969-x · 2026 · External reference
10.1016/s1570-9639(03)00024-4
10.1016/s1570-9639(03)00024-4 · External reference
“Structure-Based Design of a Fusion Glycoprotein Vaccine for Respiratory Syncytial Virus.” Science (New York
10.1126/science.1243283 · 2013 · External reference
Structural Basis of Poxvirus Fusion Regulation and Anti-A16/G9 Antibody-Mediated Neutralization and Protection
10.1016/j.cell.2025.07.040 · 2025 · External reference
10.1038/s41586-024-07899-8
10.1038/s41586-024-07899-8 · External reference
10.1073/pnas.1119817109
10.1073/pnas.1119817109 · External reference
10.64898/2026.08.27.747600
10.64898/2026.08.27.747600 · External reference
10.1038/s41586-024-07809-y
10.1038/s41586-024-07809-y · External reference
The Viral AlphaFold Database of Monomers and Homodimers Reveals Conserved Protein Folds in Viruses of Bacteria, Archaea, and Eukaryotes
10.1126/sciadv.adz8560 · 2025 · External reference
10.1126/scitranslmed.aeb3840
10.1126/scitranslmed.aeb3840 · External reference
10.1007/978-1-4614-0980-9_3
10.1007/978-1-4614-0980-9_3 · External reference
10.1038/s41467-026-70884-4
10.1038/s41467-026-70884-4 · External reference
Origins of Peptidases
2019 · External reference
FoldaVirus, a Knowledge-Based Icosahedral Capsid Prediction Tool Using AlphaFold
2026 · External reference
10.1016/j.chom.2021.02.002
10.1016/j.chom.2021.02.002 · External reference
10.1101/2025.11.10.687652
10.1101/2025.11.10.687652 · External reference
10.1093/nar/gkab314
10.1093/nar/gkab314 · External reference
10.1016/s0168-1702(99)00043-x
10.1016/s0168-1702(99)00043-x · External reference
Systems Biology of Virus-Host Protein Interactions: From Hypothesis Generation to Mechanisms of Replication and Pathogenesis
10.1146/annurev-virology-100520-011851 · 2022 · External reference
Taxonomic Expansion and Reorganization of Flaviviridae
10.1038/s41564-025-02134-0 · 2025 · External reference
A Proteome-Wide Structural Systems Approach Reveals Insights into Protein Families of All Human Herpesviruses
10.1038/s41467-024-54668-2 · 2024 · External reference
10.1093/nar/gkj109
10.1093/nar/gkj109 · External reference
10.1073/pnas.0409732102
10.1073/pnas.0409732102 · External reference
10.64898/2026.08.24.746585
10.64898/2026.08.24.746585 · External reference
10.1093/nar/gkae1113
10.1093/nar/gkae1113 · External reference
10.1073/pnas.1305187110
10.1073/pnas.1305187110 · External reference
“Logomaker: Beautiful Sequence Logos in Python.” Bioinformatics (Oxford
2020 · External reference
Predicting the Protein Interaction Landscape of a Free-Living Bacterium with Pooled-AlphaFold3
10.1038/s44320-026-00189-7 · 2026 · External reference
10.1093/nar/gkae1010
10.1093/nar/gkae1010 · External reference
10.1093/nar/gkae1084
10.1093/nar/gkae1084 · External reference
“Molecular Modeling of Protein-Peptide Complexes Mimicking Factor Xa-Prothrombin Using AlphaFold-Multimer and Molecular Dynamics Simulations for Functional Prediction.”
10.1021/acs.jcim.5c02774 · 2026 · External reference
10.1098/rstb.2011.0354
10.1098/rstb.2011.0354 · External reference
“Cryo-EM Structure of the 2019-nCoV Spike in the Prefusion Conformation.”
10.1126/science.abb2507 · 2020 · External reference
Structural Basis of Poxvirus A16/G9 Binding for Sub-Complex Formation
10.1080/22221751.2023.2179351 · 2023 · External reference
Poxvirus Structural Biology for Application to Vaccine Design
10.1016/j.it.2025.04.002 · 2025 · External reference
“Predicting Protein-Protein Interactions in the Human Proteome.”
10.1126/science.adt1630 · 2025 · External reference
10.64898/2026.04.02.716051
10.64898/2026.04.02.716051 · External reference
10.1056/nejmoa2001017
10.1056/nejmoa2001017 · External reference
“Evaluation of AlphaFold-Multimer Prediction on Multi-Chain Protein Complexes.” Bioinformatics (Oxford
2023 · External reference
Between Protein Fold and Nucleophile Identity: Multiscale Modeling of the TEV Protease Enzyme-Substrate Complex
10.1021/acsomega.2c05201 · 2022 · External reference
10.1016/j.tim.2010.11.003
10.1016/j.tim.2010.11.003 · External reference