Research graph
References from Multi-Chain Hamiltonian Replica Exchange Framework for Probing Transient Helices and Order-Disorder Transitions in Proteins. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1073/pnas.37.4.205
10.1073/pnas.37.4.205 · External reference
10.1038/171737a0
10.1038/171737a0 · External reference
10.1146/annurev.bb.21.060192.000523
10.1146/annurev.bb.21.060192.000523 · External reference
Helical polymers for biological and medical applications
10.1038/s41570-020-0180-5 · 2020 · External reference
10.1021/cr0000978
10.1021/cr0000978 · External reference
Single-and double-stranded helical polymers: synthesis, structures, and functions
10.1021/ar800091w · 2008 · External reference
Double helical conformation and extreme rigidity in a rodlike polyelectrolyte
10.1038/s41467-019-08756-3 · 2019 · External reference
Helical polymer self-assembly and chiral nanostructure formation
10.1039/d0py01558j · 2021 · External reference
10.1006/jmbi.1999.3110
10.1006/jmbi.1999.3110 · External reference
10.1016/j.str.2013.08.001
10.1016/j.str.2013.08.001 · External reference
10.1021/cr400525m
10.1021/cr400525m · External reference
10.1038/nrm1589
10.1038/nrm1589 · External reference
10.1016/s0169-409x(02)00058-3
10.1016/s0169-409x(02)00058-3 · External reference
10.1016/s0962-8924(00)01898-5
10.1016/s0962-8924(00)01898-5 · External reference
Se-quence complexity of disordered protein
10.1002/1097-0134(20010101)42:1<38::aid-prot50>3.0.co;2-3 · 2001 · External reference
Flavors of protein disorder
2003 · External reference
Monomer unfolding of a bacterial escrt-iii superfamily member is coupled to oligomer disassembly
10.1002/pro.5187 · 2024 · External reference
10.1007/978-1-60327-223-0_5
10.1007/978-1-60327-223-0_5 · External reference
10.1002/9781394314133.ch15
10.1002/9781394314133.ch15 · External reference
10.1002/pro.70387
10.1002/pro.70387 · External reference
10.1016/s0076-6879(08)04201-8
10.1016/s0076-6879(08)04201-8 · External reference
10.1016/j.bpj.2022.12.013
10.1016/j.bpj.2022.12.013 · External reference
Structural analysis of intrinsically disordered proteins by small-angle x-ray scattering
2012 · External reference
10.1016/j.febslet.2015.08.027
10.1016/j.febslet.2015.08.027 · External reference
10.1016/j.jmr.2013.11.011
10.1016/j.jmr.2013.11.011 · External reference
10.1021/acs.chemrev.1c01023
10.1021/acs.chemrev.1c01023 · External reference
10.1146/annurev.physchem.58.032806.104614
10.1146/annurev.physchem.58.032806.104614 · External reference
10.1016/j.sbi.2009.03.004
10.1016/j.sbi.2009.03.004 · External reference
10.1073/pnas.0408930102
10.1073/pnas.0408930102 · External reference
Molecular simulations of proteins: From simplified physical interactions to complex biological phenomena
10.1016/j.bbapap.2022.140757 · 2022 · External reference
10.1016/b978-0-323-99127-8.00018-0
10.1016/b978-0-323-99127-8.00018-0 · External reference
10.2165/00822942-200403020-00005
10.2165/00822942-200403020-00005 · External reference
10.1110/ps.4210102
10.1110/ps.4210102 · External reference
10.1016/s1093-3263(00)00138-8
10.1016/s1093-3263(00)00138-8 · External reference
10.1016/s0959-440x(02)00289-0
10.1016/s0959-440x(02)00289-0 · External reference
Transient non-native helix formation during the folding of β-lactoglobulin
10.3390/biom4010202 · 2014 · External reference
10.1093/nar/gkt817
10.1093/nar/gkt817 · External reference
10.1038/75932
10.1038/75932 · External reference
The role of transient intermediate structures in the unfolding of the trp-cage fast-folding protein: Generating ensembles from time-resolved x-ray solution scattering with genetic algorithms
10.1021/acs.jpclett.2c03680 · 2023 · External reference
Thermal denaturation of polyalanine peptide in water by molecular dynamics simulations and theoretical prediction of infrared spectra: Helixcoil transition kinetics
10.1021/jp0649091 · 2007 · External reference
A molecular dynamics simulation of polyalanine: an analysis of equilibrium motions and helix–coil transitions
10.1002/bip.360310911 · 1991 · External reference
10.1038/nature01428
10.1038/nature01428 · External reference
Secondary structure formation and lcst behavior of short elastin-like peptides
10.1021/bm800784y · 2008 · External reference
Structure–property relationships of elastin-like polypeptides: a review of experimental and computational studies
2021 · External reference
Order–disorder balance in silk-elastin-like polypeptides determines their self-assembly into hydrogel networks
2024 · External reference
10.1016/j.str.2016.07.007
10.1016/j.str.2016.07.007 · External reference
10.1073/pnas.1912055117
10.1073/pnas.1912055117 · External reference
10.1021/jacs.9b10736
10.1021/jacs.9b10736 · External reference
10.1101/2024.10.10.617695
10.1101/2024.10.10.617695 · External reference
Designing cooperatively folded abiotic uni-and multimolecular helix bundles
10.1038/nchem.2854 · 2018 · External reference
10.1021/acs.chemrev.6b00163
10.1021/acs.chemrev.6b00163 · External reference
10.1016/b978-0-32-390292-2.00011-8
10.1016/b978-0-32-390292-2.00011-8 · External reference
10.1016/j.biotechadv.2014.11.011
10.1016/j.biotechadv.2014.11.011 · External reference
10.1016/0022-2836(92)90264-k
10.1016/0022-2836(92)90264-k · External reference
Studying pressure denaturation of a protein by molecular dynamics simulations
10.1002/prot.22680 · 2010 · External reference
Recent advances in transferable coarse-grained modeling of proteins
10.1016/bs.apcsb.2014.06.005 · 2014 · External reference
The martini coarse-grained force field: extension to proteins
10.1021/ct700324x · 2008 · External reference
10.1039/c1cp20752k
10.1039/c1cp20752k · External reference
The automated optimisation of a coarsegrained force field using free energy data
10.1039/d0cp05041e · 2021 · External reference
10.1111/j.1399-3011.1975.tb02465.x
10.1111/j.1399-3011.1975.tb02465.x · External reference
Gō model revisited
10.2142/biophysico.16.0_248 · 2019 · External reference
Generic coarse-grained model for protein folding and aggregation
2009 · External reference
10.1021/ja105206w
10.1021/ja105206w · External reference
10.1016/j.tibs.2023.08.009
10.1016/j.tibs.2023.08.009 · External reference
10.1016/j.bpj.2026.01.011
10.1016/j.bpj.2026.01.011 · External reference
10.1073/pnas.240245297
10.1073/pnas.240245297 · External reference
10.1016/s0009-2614(99)01123-9
10.1016/s0009-2614(99)01123-9 · External reference
Optimized molecular dynamics force fields applied to the helixcoil transition of polypeptides
10.1021/jp901540t · 2009 · External reference
Unresolved reference
External reference
10.1016/s0006-3495(98)77529-0
10.1016/s0006-3495(98)77529-0 · External reference
10.1126/science.181.4096.223
10.1126/science.181.4096.223 · External reference
10.1021/jacs.0c03217
10.1021/jacs.0c03217 · External reference
Unified understanding of folding and binding mechanisms of globular and intrinsically disor-dered proteins
10.1007/s12551-017-0346-7 · 2018 · External reference
10.1103/physrevlett.104.198304
10.1103/physrevlett.104.198304 · External reference
The interplay between transient α-helix formation and side chain rotamer distributions in disordered proteins probed by methyl chemical shifts
10.1002/pro.726 · 2011 · External reference
Helix nucleation kinetics from molecular simulations in explicit solvent
10.1002/1097-0134(20010101)42:1<77::aid-prot80>3.0.co;2-# · 2001 · External reference
Testing the transferability of a coarse-grained model to intrinsically disordered proteins
10.1039/c5cp05652g · 2015 · External reference
10.1093/oso/9780198520597.001.0001
10.1093/oso/9780198520597.001.0001 · External reference
10.1007/s10577-010-9177-0
10.1007/s10577-010-9177-0 · External reference
Higher-order chromatin structure: bridging physics and biology
10.1016/j.gde.2012.01.006 · 2012 · External reference
Glass transition of disentangled and entangled polymer melts: single-chain-nanoparticles approach
10.1021/acs.macromol.0c00550 · 2020 · External reference
10.1063/5.0287110
10.1063/5.0287110 · External reference
Im30 idps form a membrane-protective carpet upon super-complex disassembly
10.1038/s42003-020-01314-4 · 2020 · External reference
Structural plasticity of bacterial escrt-iii protein pspa in higher-order assemblies
10.1038/s41594-024-01359-7 · 2025 · External reference
10.7554/elife.12548
10.7554/elife.12548 · External reference
10.1038/s41580-025-00909-1
10.1038/s41580-025-00909-1 · External reference
Structural dynamics flexibility informs function and evolu-tion at a proteome scale
10.1016/j.bpj.2012.11.1287 · 2013 · External reference
10.1016/s0022-2836(02)00734-9
10.1016/s0022-2836(02)00734-9 · External reference
10.1038/nsb0595-380
10.1038/nsb0595-380 · External reference
10.1110/ps.8.6.1166
10.1110/ps.8.6.1166 · External reference
10.1146/annurev-biophys-062215-010915
10.1146/annurev-biophys-062215-010915 · External reference
10.1021/bi036269n
10.1021/bi036269n · External reference
10.1073/pnas.1304749110
10.1073/pnas.1304749110 · External reference
Hoobas: A highly object-oriented builder for molecular dynamics
10.1016/j.commatsci.2019.05.003 · 2019 · External reference
Hoomd-blue: A python package for high-performance molecular dynamics and hard particle monte carlo simulations
10.1016/j.commatsci.2019.109363 · 2020 · External reference
Quantized bounding volume hierarchies for neighbor search in molecular simulations on graphics processing units
10.1016/j.commatsci.2019.04.004 · 2019 · External reference
10.1063/1.1472510
10.1063/1.1472510 · External reference
10.1063/1.1308516
10.1063/1.1308516 · External reference
10.25080/majora-1b6fd038-003
10.25080/majora-1b6fd038-003 · External reference
10.25080/majora-4af1f417-016
10.25080/majora-4af1f417-016 · External reference
Simple data and workflow management with the signac framework
10.1016/j.commatsci.2018.01.035 · 2018 · External reference
10.1088/0965-0393/18/1/015012
10.1088/0965-0393/18/1/015012 · External reference
