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References from Robust ORF Deconvolution from Multiple Ribo-seq Datasets with Group LASSO Penalty. Local targets link to admitted publications; unresolved targets remain external evidence.
Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
10.1016/j.celrep.2014.07.045 · 2014 · External reference
10.1093/nar/gkz301
10.1093/nar/gkz301 · External reference
10.1073/pnas.1614788113
10.1073/pnas.1614788113 · External reference
10.1126/science.aay0262
10.1126/science.aay0262 · External reference
10.15252/embj.201592759
10.15252/embj.201592759 · External reference
10.1038/s41586-023-05946-4
10.1038/s41586-023-05946-4 · External reference
Unresolved reference
External reference
10.1038/35008096
10.1038/35008096 · External reference
10.1158/2326-6066.cir-19-0886
10.1158/2326-6066.cir-19-0886 · External reference
10.4049/jimmunol.1502045
10.4049/jimmunol.1502045 · External reference
The cryptic immunopep- tidome in health and disease
10.1016/j.tig.2024.09.003 · 2025 · External reference
Improved Ribo-seq enables identification of cryptic translation events
10.1038/nmeth.4631 · 2018 · External reference
10.1371/journal.pbio.3002409
10.1371/journal.pbio.3002409 · External reference
10.1126/science.1168978
10.1126/science.1168978 · External reference
Quantitative profiling of initiating ribosomes in vivo
10.1038/nmeth.3208 · 2015 · External reference
Detecting actively translated open reading frames in ribosome profiling data
10.1038/nmeth.3688 · 2016 · External reference
Deep learning to decode sites of RNA translation in normal and cancerous tissues
10.1038/s41467-025-56543-0 · 2025 · External reference
Quantification of translation uncovers the functions of the alternative transcriptome
10.1038/s41594-020-0450-4 · 2020 · External reference
10.1186/s12859-021-04254-w
10.1186/s12859-021-04254-w · External reference
A systematic evaluation of computational methods for predicting translated non-canonical ORFs from ribosome profiling data
10.1016/j.jgg.2023.08.010 · 2024 · External reference
10.1093/bioinformatics/btp113
10.1093/bioinformatics/btp113 · External reference
10.1093/bioinformatics/btp692
10.1093/bioinformatics/btp692 · External reference
10.7554/elife.13328
10.7554/elife.13328 · External reference
10.7554/elife.08890
10.7554/elife.08890 · External reference
Accurate annotation of human protein-coding small open reading frames
10.1038/s41589-019-0425-0 · 2020 · External reference
10.1111/j.1467-9868.2005.00532.x
10.1111/j.1467-9868.2005.00532.x · External reference
10.1186/s12859-015-0695-9
10.1186/s12859-015-0695-9 · External reference
10.1198/016214501753209004
10.1198/016214501753209004 · External reference
10.1016/j.celrep.2021.108815
10.1016/j.celrep.2021.108815 · External reference
10.1016/j.molcel.2015.11.013
10.1016/j.molcel.2015.11.013 · External reference
10.1093/nar/gky179
10.1093/nar/gky179 · External reference
10.3390/life11070701
10.3390/life11070701 · External reference
Genome-wide identification and differential analysis of transla- tional initiation
10.1038/s41467-017-01981-8 · 2017 · External reference
Bayesian prediction of RNA translation from ribosome profiling
2017 · External reference
A vast evolutionarily transient translatome contributes to phenotype and fitness
10.1016/j.cels.2023.04.002 · 2023 · External reference
10.1093/bioinformatics/btz878
10.1093/bioinformatics/btz878 · External reference
10.64898/2026.03.17.712439
10.64898/2026.03.17.712439 · External reference
Unresolved reference
External reference
Deep learning enables de novo peptide sequencing from data- independent-acquisition mass spectrometry
10.1038/s41592-018-0260-3 · 2019 · External reference
10.1038/s41587-021-01021-3
10.1038/s41587-021-01021-3 · External reference
An expanded reference catalog of translated open reading frames for biomedical research
10.1093/nar/gkag234 · 2026 · External reference
Salmon provides fast and bias-aware quantification of transcript expression
10.1038/nmeth.4197 · 2017 · External reference
Riboformer: A deep learning framework for predicting context- dependent translation dynamics
10.1038/s41467-024-46241-8 · 2024 · External reference
Tackling Cancer through Global Team Science
10.1158/2159-8290.cd-25-0282 · 2025 · External reference