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References from Approximate local alignment via chained MEM divergence estimation for detecting horizontal gene transfer. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/0022-2836(81)90087-5
10.1016/0022-2836(81)90087-5 · External reference
10.1006/jmbi.1990.9999
10.1006/jmbi.1990.9999 · External reference
10.1101/gr.229202.articlepublishedonlinebeforemarch2002
10.1101/gr.229202.articlepublishedonlinebeforemarch2002 · External reference
10.1101/gr.113985.110
10.1101/gr.113985.110 · External reference
FastGA: fast genome alignment
2025 · External reference
10.1093/bioinformatics/bty191
10.1093/bioinformatics/bty191 · External reference
10.1038/nrmicro1235
10.1038/nrmicro1235 · External reference
10.1093/jac/dkaa390
10.1093/jac/dkaa390 · External reference
ICEscreen: a tool to detect Firmicute ICEs and IMEs, isolated or enclosed in composite structures
10.1093/nargab/lqac079 · 2022 · External reference
IntegronFinder 2.0: Identification and analysis of integrons across bacteria, with a focus on antibiotic resistance in Klebsiella
10.3390/microorganisms10040700 · 2022 · External reference
10.1038/s41587-023-01953-y
10.1038/s41587-023-01953-y · External reference
10.1093/bioinformatics/btl369
10.1093/bioinformatics/btl369 · External reference
skandiver: a divergence-based analysis tool for identifying intercellular mobile genetic elements
2024 · External reference
Fast and robust metagenomic sequence comparison through sparse chaining with skani
2023 · External reference
10.1016/j.isci.2021.102696
10.1016/j.isci.2021.102696 · External reference
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
2013 · External reference
10.1101/gr.279858.124
10.1101/gr.279858.124 · External reference
Incorporating indel channels into average-case analysis of seed-chain-extend
2026 · External reference
10.1093/nar/gkab776
10.1093/nar/gkab776 · External reference
10.1093/molbev/msac174
10.1093/molbev/msac174 · External reference
10.1186/s40168-022-01368-y
10.1186/s40168-022-01368-y · External reference
The TELCoMB protocol for high-sensitivity detection of ARG-MGE colocalizations in complex microbial communities
10.1002/cpz1.70031 · 2024 · External reference
