Research graph
References from SpatialOmicsLab: an integrated research environment for AI co-scientists in spatial transcriptomics. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/s41592-024-02212-x
10.1038/s41592-024-02212-x · External reference
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10.1126/science.aaf2403
10.1126/science.aaf2403 · External reference
10.1038/s41587-020-0739-1
10.1038/s41587-020-0739-1 · External reference
10.1126/science.aaw1219
10.1126/science.aaw1219 · External reference
High-definition spatial transcriptomic profiling of immune cell populations in colorectal cancer
10.1038/s41588-025-02193-3 · 2025 · External reference
10.1016/j.cell.2022.04.003
10.1016/j.cell.2022.04.003 · External reference
10.1126/science.aaa6090
10.1126/science.aaa6090 · External reference
10.1038/nmeth.2892
10.1038/nmeth.2892 · External reference
10.1038/s41586-019-1049-y
10.1038/s41586-019-1049-y · External reference
10.1038/s41467-023-43458-x
10.1038/s41467-023-43458-x · External reference
10.1038/s41587-022-01483-z
10.1038/s41587-022-01483-z · External reference
10.1002/smtd.202401194
10.1002/smtd.202401194 · External reference
10.1038/s41467-021-25557-9
10.1038/s41467-021-25557-9 · External reference
10.1186/s13059-017-1382-0
10.1186/s13059-017-1382-0 · External reference
10.1038/s41592-021-01358-2
10.1038/s41592-021-01358-2 · External reference
10.1186/s13059-021-02286-2
10.1186/s13059-021-02286-2 · External reference
10.1038/s41587-023-01767-y
10.1038/s41587-023-01767-y · External reference
10.1038/s41587-023-01733-8
10.1038/s41587-023-01733-8 · External reference
10.1038/s41592-022-01409-2
10.1038/s41592-022-01409-2 · External reference
A practical guide to spatial transcriptomics: lessons from over 1000 samples
10.1016/j.tibtech.2025.08.020 · 2026 · External reference
10.1093/nar/gkaf303
10.1093/nar/gkaf303 · External reference
10.1016/j.csbj.2023.01.016 · Admitted local publication
10.1038/s41587-021-01139-4
10.1038/s41587-021-01139-4 · External reference
10.1038/s41587-021-00830-w
10.1038/s41587-021-00830-w · External reference
10.1038/s41587-021-01044-w
10.1038/s41587-021-01044-w · External reference
10.1038/s41592-022-01459-6
10.1038/s41592-022-01459-6 · External reference
A. anndata: access and store annotated data matrices
10.21105/joss.04371 · 2024 · External reference
10.1007/s11704-024-40231-1
10.1007/s11704-024-40231-1 · External reference
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Reflexion: language agents with verbal reinforcement learning
2023 · External reference
Accelerating scientific discovery with Co-Scientist
10.1038/s41586-026-10644-y · 2026 · External reference
10.1038/s41586-025-09442-9
10.1038/s41586-025-09442-9 · External reference
10.1038/s41586-023-06792-0
10.1038/s41586-023-06792-0 · External reference
CRISPR-GPT for agentic automation of gene-editing experiments. Nat
2026 · External reference
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CellVoyager: AI CompBio agent generates new insights by autonomously analyzing biological data
10.1038/s41592-026-03029-6 · 2026 · External reference
10.1101/2025.04.03.646459
10.1101/2025.04.03.646459 · External reference
10.1101/2025.04.01.646731
10.1101/2025.04.01.646731 · External reference
10.64898/2026.05.01.722244
10.64898/2026.05.01.722244 · External reference
10.64898/2026.03.10.710824
10.64898/2026.03.10.710824 · External reference
10.64898/2026.04.06.716827
10.64898/2026.04.06.716827 · External reference
10.1101/2025.06.06.658341
10.1101/2025.06.06.658341 · External reference
10.64898/2026.02.26.708361
10.64898/2026.02.26.708361 · External reference
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10.64898/2026.05.12.724604
10.64898/2026.05.12.724604 · External reference
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10.1186/s13059-026-03998-z
10.1186/s13059-026-03998-z · External reference
SWE-agent: agent-computer interfaces enable automated software engineering
2024 · External reference
Practical computational reproducibility in the life sciences
10.1016/j.cels.2018.03.014 · 2018 · External reference
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10.1145/3796519
10.1145/3796519 · External reference
10.1038/s41593-020-00787-0
10.1038/s41593-020-00787-0 · External reference
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10.1126/science.aau5324
10.1126/science.aau5324 · External reference
10.1016/j.xgen.2025.101034
10.1016/j.xgen.2025.101034 · External reference
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Construction of a 3D whole organism spatial atlas by joint modelling of multiple slices with deep neural networks. Nat
10.1038/s42256-023-00734-1 · 2023 · External reference
10.1038/s41588-023-01588-4
10.1038/s41588-023-01588-4 · External reference
10.1038/s41467-023-35947-w
10.1038/s41467-023-35947-w · External reference
10.1038/s41467-023-43220-3
10.1038/s41467-023-43220-3 · External reference
10.1038/s41467-022-29439-6
10.1038/s41467-022-29439-6 · External reference
10.1126/science.aaf6463
10.1126/science.aaf6463 · External reference
10.1523/jneurosci.4317-05.2006
10.1523/jneurosci.4317-05.2006 · External reference
10.1523/jneurosci.4178-07.2008
10.1523/jneurosci.4178-07.2008 · External reference
10.1096/fj.02-0408rev
10.1096/fj.02-0408rev · External reference
10.1038/nature25739
10.1038/nature25739 · External reference
10.1038/s41467-023-43256-5
10.1038/s41467-023-43256-5 · External reference
10.1038/s41586-019-1506-7
10.1038/s41586-019-1506-7 · External reference
10.1523/jneurosci.15-03-01835.1995
10.1523/jneurosci.15-03-01835.1995 · External reference
10.1038/s41467-024-48981-z
10.1038/s41467-024-48981-z · External reference
