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References from DECONVersation: Single Cell Foundation Model-Derived Embeddings for Robust Cell Type Deconvolution of Bulk RNA-seq. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/s41467-020-19015-1
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Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology. Nat
2022 · External reference
10.1038/s41467-019-10802-z
10.1038/s41467-019-10802-z · External reference
omnideconv: a unifying framework for using and benchmarking single-cell-informed deconvolution of bulk RNA-seq data
10.1186/s13059-026-03955-w · 2026 · External reference
10.1186/s13059-025-03552-3
10.1186/s13059-025-03552-3 · External reference
10.1038/s41586-023-06139-9
10.1038/s41586-023-06139-9 · External reference
10.1101/2023.09.11.557287
10.1101/2023.09.11.557287 · External reference
10.1038/s41592-024-02201-0
10.1038/s41592-024-02201-0 · External reference
10.1101/2025.11.07.687322
10.1101/2025.11.07.687322 · External reference
10.1038/s12276-025-01547-5
10.1038/s12276-025-01547-5 · External reference
10.1261/rna.080889.125
10.1261/rna.080889.125 · External reference
10.48550/arxiv.2106.09685
10.48550/arxiv.2106.09685 · External reference
10.1038/s41587-026-03112-5
10.1038/s41587-026-03112-5 · External reference
10.64898/2026.02.24.707424
10.64898/2026.02.24.707424 · External reference
10.1145/3620665.3640366
10.1145/3620665.3640366 · External reference
10.1101/2023.10.24.563625
10.1101/2023.10.24.563625 · External reference
10.1371/journal.pone.0118528
10.1371/journal.pone.0118528 · External reference
10.1186/s13073-019-0638-6
10.1186/s13073-019-0638-6 · External reference
ATAC-clock: An aging clock based on chromatin accessibility
2024 · External reference
10.1101/gr.278822.123
10.1101/gr.278822.123 · External reference
10.1126/science.adh1938
10.1126/science.adh1938 · External reference
10.1186/s13059-023-03016-6
10.1186/s13059-023-03016-6 · External reference
10.12688/f1000research.73600.2
10.12688/f1000research.73600.2 · External reference
10.1093/bioinformatics/btac757
10.1093/bioinformatics/btac757 · External reference
10.1093/database/baz046
10.1093/database/baz046 · External reference
10.1093/nar/gkag706
10.1093/nar/gkag706 · External reference
Alleviating batch effects in cell type deconvolution with SCCAF-D
10.1038/s41467-024-55213-x · 2024 · External reference
10.1038/s41588-024-01873-w
10.1038/s41588-024-01873-w · External reference
10.1038/s41467-024-49916-4
10.1038/s41467-024-49916-4 · External reference
10.64898/2026.08.28.747622
10.64898/2026.08.28.747622 · External reference
10.1038/s41467-026-72570-x
10.1038/s41467-026-72570-x · External reference
Unresolved reference
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