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References from scGSCA: gene-set differential co-expression analysis for single-cell RNA sequencing data. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1093/bib/bbab259 · 2021 · External reference
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Single-cell RNA sequencing technologies and applications: a brief overview
10.1002/ctm2.694 · 2022 · External reference
10.1101/gr.097378.109
10.1101/gr.097378.109 · External reference
Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types
10.1038/ncomms4231 · 2014 · External reference
10.1093/bib/bbw139
10.1093/bib/bbw139 · External reference
Dieerential co-expression analyses allow the identification of critical signalling pathways altered during tumour transformation and progression
10.3390/ijms21249461 · 2020 · External reference
10.1038/s41467-026-71507-8
10.1038/s41467-026-71507-8 · External reference
10.1186/s13059-020-1926-6
10.1186/s13059-020-1926-6 · External reference
A practical solution to pseudoreplication bias in single-cell studies
10.1038/s41467-021-21038-1 · 2021 · External reference
Evaluating measures of association for single-cell transcriptomics
10.1038/s41592-019-0372-4 · 2019 · External reference
Cell-type-specific coexpression inference from single cell RNA-sequencing data
10.1038/s41467-023-40503-7 · 2023 · External reference
10.1186/1471-2105-10-109
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10.1093/bioinformatics/btt687
10.1093/bioinformatics/btt687 · External reference
MetaGSCA: A tool for meta-analysis of gene set dieerential coexpression
10.1371/journal.pcbi.1008976 · 2021 · External reference
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10.1186/gb-2010-11-2-r23
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10.1093/nar/gku099
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KEDDY: a knowledge-based statistical gene set test method to detect dieerential functional protein–protein interactions
10.1093/bioinformatics/bty686 · 2019 · External reference
CoGA: an R package to identify dieerentially coexpressed gene sets by analyzing the graph spectra
10.1371/journal.pone.0135831 · 2015 · External reference
COTAN: scRNA-seq data analysis based on gene co-expression
10.1093/nargab/lqab072 · 2021 · External reference
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10.1186/s13059-023-02949-2
10.1186/s13059-023-02949-2 · External reference
GSNCASCR: An R Package to Identify Dieerentially Co-Expressed Curated Gene Sets with Single-Cell RNA-Seq Data
10.3390/ijms26104771 · 2025 · External reference
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Unresolved reference
External reference
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2009 · External reference
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10.1038/nrc3005 · External reference
Semaphorin 3F and Netrin-1: the novel function as a regulator of tumor microenvironment
10.3389/fphys.2018.01662 · 2018 · External reference
Molecular signaling in tumorigenesis of gastric cancer
10.29252/ibj.22.4.217 · 2018 · External reference
10.1038/nrc2602
10.1038/nrc2602 · External reference
Molecular anatomy and pathogenic actions of Helicobacter pylori CagA that underpin gastric carcinogenesis
10.1038/s41423-019-0339-5 · 2020 · External reference
Helicobacter pylori infection, oncogenic pathways and epigenetic mechanisms in gastric carcinogenesis
10.2217/fon.10.37 · 2010 · External reference
Signaling pathways and therapeutic interventions in gastric cancer
10.1038/s41392-022-01190-w · 2022 · External reference
Mitogen-activated protein kinase signalling pathway and invasion and metastasis of gastric cancer
10.3748/wjg.v21.i41.11673 · 2015 · External reference
10.1002/humu.10180
10.1002/humu.10180 · External reference
Association of the TGFβ gene family with microenvironmental features of gastric cancer and prediction of response to immunotherapy
10.3389/fonc.2022.920599 · 2022 · External reference
The plasticity of epithelial cells and its potential in the induced dieerentiation of gastric cancer
10.1038/s41420-024-02275-x · 2024 · External reference
Wnt signaling in gastric cancer: current progress and future prospects
10.3389/fonc.2024.1410513 · 2024 · External reference
Targeting Wnt signalling for the treatment of gastric cancer
10.3390/ijms21113927 · 2020 · External reference
10.1016/j.cell.2008.07.001
10.1016/j.cell.2008.07.001 · External reference
10.1002/pmic.201700167
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10.1136/gutjnl-2019-320368
10.1136/gutjnl-2019-320368 · External reference
Angiogenesis and antiangiogenesis in triple-negative breast cancer
10.1016/j.tranon.2016.07.002 · 2016 · External reference
10.1093/annonc/mdp062
10.1093/annonc/mdp062 · External reference
Precision breast cancer medicine: early stage triple negative breast cancer—a review of molecular characterisation, therapeutic targets and future trends
10.3389/fonc.2022.866889 · 2022 · External reference
10.1210/me.2010-0164
10.1210/me.2010-0164 · External reference
The proliferative and apoptotic landscape of basal-like breast cancer
10.3390/ijms20030667 · 2019 · External reference
Unresolved reference
External reference
Epithelial-mesenchymal transition and breast cancer
10.3390/jcm5020013 · 2016 · External reference
10.1101/2023.01.30.526388
10.1101/2023.01.30.526388 · External reference
10.3390/cancers12123557
10.3390/cancers12123557 · External reference
10.1634/theoncologist.2012-0397
10.1634/theoncologist.2012-0397 · External reference
Hypoxia-mediated activation of hypoxia-inducible factor-1α in triple-negative breast cancer: A review
10.1097/md.0000000000035493 · 2023 · External reference
10.1158/1541-7786.mcr-18-0345
10.1158/1541-7786.mcr-18-0345 · External reference
Dieerential response of luminal and basal breast cancer cells to acute and chronic hypoxia
10.1007/s10549-023-06863-w · 2023 · External reference
10.1002/ijc.29923
10.1002/ijc.29923 · External reference
STAT3 signaling in breast cancer: multicellular actions and therapeutic potential
10.3390/cancers14020429 · 2022 · External reference
Cytokine networks in triple-negative breast cancer: mechanisms, therapeutic targets, and emerging strategies
10.3390/biomedicines13081945 · 2025 · External reference
Pretreatment levels of circulating Th1 and Th2 cytokines, and their ratios, are associated with ER-negative and triple negative breast cancers
10.1007/s10549-013-2549-3 · 2013 · External reference
Spatially resolved single-cell landscape of tumor immunotypes reveals the central role of interferon signaling and plasmacytoid dendritic cells in triple-negative breast cancer
10.1136/jitc-2025-014020 · 2026 · External reference
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10.1177/1947601910378691 · 2010 · External reference
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10.3390/biom7030053 · External reference
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10.1038/bjc.2016.46 · External reference
10.1007/s12282-024-01567-5
10.1007/s12282-024-01567-5 · External reference
Triple negative breast cancer: shedding light onto the role of pi3k/akt/mtor pathway
10.18632/oncotarget.10858 · 2016 · External reference
Interleukin- and nuclear factor kappa B signaling promote breast cancer progression and treatment resistance
10.3390/cells11101673 · 2022 · External reference
Tumor-stroma-inflammation networks promote pro-metastatic chemokines and aggressiveness characteristics in triple-negative breast cancer
10.3389/fimmu.2019.00757 · 2019 · External reference
10.1158/1078-0432.ccr-04-2421
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10.1155/2011/948406
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10.1172/jci45961
10.1172/jci45961 · External reference
Complement activation in inflammatory skin diseases
10.3389/fimmu.2018.00639 · 2018 · External reference
10.1165/rcmb.2013-0485tr
10.1165/rcmb.2013-0485tr · External reference
10.1038/ni.1923
10.1038/ni.1923 · External reference
10.1007/s00441-016-2464-0
10.1007/s00441-016-2464-0 · External reference
10.1146/annurev-physiol-012110-142225
10.1146/annurev-physiol-012110-142225 · External reference
10.1002/dvdy.24561
10.1002/dvdy.24561 · External reference
Cytokinocytes: the diverse contribution of keratinocytes to immune responses in skin
10.1172/jci.insight.142067 · 2020 · External reference
Inflammatory mechanisms in the lung
2009 · External reference
Skin - a vast organ with immunological function (Review)
2020 · External reference
10.1016/j.cyto.2018.11.022
10.1016/j.cyto.2018.11.022 · External reference
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Notch signaling in the mammalian respiratory system, specifically the trachea and lungs, in development, homeostasis, regeneration, and disease
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The role of TGFβ signaling in wound epithelialization
10.1089/wound.2013.0466 · 2014 · External reference
TGF-β signaling in lung health and disease
10.3390/ijms19082460 · 2018 · External reference
10.14348/molcells.2020.0059
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10.1146/annurev.cellbio.22.010305.104357
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