Research graph
References from Beyond the Final Layer: Evaluating Single-Cell Foundation Model Representations for Molecular Prediction. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/s42256-022-00534-z
10.1038/s42256-022-00534-z · External reference
10.1038/s41592-024-02201-0
10.1038/s41592-024-02201-0 · External reference
10.1038/s41586-023-06139-9
10.1038/s41586-023-06139-9 · External reference
10.1038/s41592-024-02305-7
10.1038/s41592-024-02305-7 · External reference
Deeper evaluation of a single-cell foundation model
10.1038/s42256-024-00949-w · 2024 · External reference
10.1186/s13059-025-03574-x
10.1186/s13059-025-03574-x · External reference
Unresolved reference
External reference
BioLLM: A standardized framework for integrating and benchmarking single-cell foundation models
10.1016/j.patter.2025.101326 · 2025 · External reference
10.1186/s13059-025-03781-6
10.1186/s13059-025-03781-6 · External reference
Unresolved reference
External reference
10.1038/s41467-024-52646-1
10.1038/s41467-024-52646-1 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1126/science.abl4896
10.1126/science.abl4896 · External reference
Unresolved reference
External reference
Massively parallel digital transcriptional profiling of single cells
10.1038/ncomms14049 · 2017 · External reference
10.1038/s41587-023-01830-8
10.1038/s41587-023-01830-8 · External reference
10.1126/science.abj4008
10.1126/science.abj4008 · External reference
10.1126/science.aax6234
10.1126/science.aax6234 · External reference
BERT: Pre-training of deep bidirectional transformers for language understanding
2018 · External reference
What does BERT look at? an analysis of BERT’s attention
2019 · External reference
How does BERT answer questionş a layer-wise analysis of transformer representations
2019 · External reference
Does representation matter? exploring intermediate layers in large language models
2024 · External reference
Layer by layer: Uncovering hidden representations in language models
2025 · External reference
Deep-learning-based gene perturbation effect prediction does not yet outperform simple linear baselines
10.1038/s41592-025-02772-6 · 2025 · External reference
