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References from Nation-scale recovery of complete environmental plasmids pushes the boundaries of plasmid diversity through long-read sequencing. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.3389/fmicb.2015.00242 · External reference
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10.1093/bioinformatics/btaf474
10.1093/bioinformatics/btaf474 · External reference
Benchmarking of long-read assemblers for prokaryote whole genome sequencing
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10.3389/fmicb.2017.00182
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10.1128/mmbr.00020-10
10.1128/mmbr.00020-10 · External reference
10.1016/j.plasmid.2023.102684
10.1016/j.plasmid.2023.102684 · External reference
10.1099/mgen.0.000206
10.1099/mgen.0.000206 · External reference
10.1038/s41467-020-17278-2
10.1038/s41467-020-17278-2 · External reference
Unresolved reference
External reference
10.1016/j.cub.2018.05.021
10.1016/j.cub.2018.05.021 · External reference
10.1073/pnas.1318106111
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10.1038/s41587-023-01953-y · External reference
Plasmer: an Accurate and Sensitive Bacterial Plasmid Prediction Tool Based on Machine Learning of Shared k-mers and Genomic Features
2023 · External reference
10.1093/nar/gkad578
10.1093/nar/gkad578 · External reference
10.1093/bioinformatics/btaa490
10.1093/bioinformatics/btaa490 · External reference
10.1038/s41592-020-00971-x
10.1038/s41592-020-00971-x · External reference
10.1093/nar/gkaf348
10.1093/nar/gkaf348 · External reference
Fast and robust estimate of bacterial genus novelty using the percentage of conserved proteins with unique matches (POCPu)
10.7717/peerj.20259 · 2025 · External reference
10.1093/bioinformatics/btab184
10.1093/bioinformatics/btab184 · External reference
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10.1038/s41467-022-30269-9 · External reference
MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes
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10.1093/nar/gky425
10.1093/nar/gky425 · External reference
The origin and evolution of IncF33 plasmids based on large-scale data sets
2023 · External reference
10.1007/s00018-008-8588-y
10.1007/s00018-008-8588-y · External reference
Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats
10.1038/s41564-025-02062-z · 2025 · External reference
Energy Conservation and Hydrogenase Function in Methanogenic Archaea, in Particular the Genus Methanosarcina
2019 · External reference
10.1128/mbio.01256-18
10.1128/mbio.01256-18 · External reference
10.1128/mbio.02285-16
10.1128/mbio.02285-16 · External reference
10.1093/femsle/fnaa172
10.1093/femsle/fnaa172 · External reference
Linking microbial Sphagnum degradation and acetate mineralization in acidic peat bogs: from global insights to a genome-centric case study
10.1038/s41396-020-00782-0 · 2021 · External reference
The Oligosaccharyltransferase AglB Supports Surface-Associated Growth and Iron Oxidation in Methanococcus maripaludis
2021 · External reference
10.1128/aem.59.11.3832-3839.1993
10.1128/aem.59.11.3832-3839.1993 · External reference
Cell surface differences within the genus Methanosarcina shape interactions with the extracellular environment
2025 · External reference
Isolation and characterization of disaggregatase from Methanosarcina mazei LYC
10.1128/aem.56.12.3693-3698.1990 · 1990 · External reference
10.1128/jb.153.2.1111-1113.1983
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10.1186/s40793-026-00887-7
10.1186/s40793-026-00887-7 · External reference
10.3389/fmicb.2012.00061
10.3389/fmicb.2012.00061 · External reference
Unresolved reference
External reference
A widespread group of large plasmids in methanotrophic Methanoperedens archaea
10.1038/s41467-022-34588-9 · 2022 · External reference
The Microflora Danica atlas of Danish environmental microbiomes
10.1038/s41586-025-09794-2 · 2026 · External reference
10.1093/bioinformatics/bty191
10.1093/bioinformatics/bty191 · External reference
10.1038/nbt.3988
10.1038/nbt.3988 · External reference
10.1128/aem.00991-22
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10.1128/microbiolspec.mdna3-0045-2014
10.1128/microbiolspec.mdna3-0045-2014 · External reference
10.1038/s41592-023-02019-2
10.1038/s41592-023-02019-2 · External reference
10.1038/s41598-019-41695-z
10.1038/s41598-019-41695-z · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1186/1471-2105-11-119
10.1186/1471-2105-11-119 · External reference
10.1101/2021.06.03.446934
10.1101/2021.06.03.446934 · External reference
10.1093/nar/gky1085
10.1093/nar/gky1085 · External reference
10.1038/s41592-021-01101-x
10.1038/s41592-021-01101-x · External reference
10.1093/nar/gkac920
10.1093/nar/gkac920 · External reference
10.1093/nar/gkt1252
10.1093/nar/gkt1252 · External reference
Unresolved reference
External reference
10.1093/biostatistics/kxj037
10.1093/biostatistics/kxj037 · External reference
10.32614/cran.package.vegan
10.32614/cran.package.vegan · External reference
Rapid species-level metagenome profiling and containment estimation with sylph
10.1038/s41587-024-02412-y · 2025 · External reference
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
10.1038/ismej.2017.126 · 2017 · External reference
10.1093/nar/gkae1010
10.1093/nar/gkae1010 · External reference
Evolution of function in protein superfamilies, from a structural perspective 1 1Edited by A
10.1006/jmbi.2001.4513 · 2001 · External reference
10.1038/srep33964
10.1038/srep33964 · External reference
Unresolved reference
External reference
10.1126/science.adu2404
10.1126/science.adu2404 · External reference
10.1016/j.jmb.2015.11.006
10.1016/j.jmb.2015.11.006 · External reference
