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References from Unsupervised Clustering Enables Cohort-Specific Variant Recalibration in Crops. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.molp.2024.03.007
10.1016/j.molp.2024.03.007 · External reference
. ggalluvial: Layered Grammar for Alluvial Plots
10.21105/joss.02017 · 2020 · External reference
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10.1186/1471-2164-13-281
10.1186/1471-2164-13-281 · External reference
10.1126/science.1253435
10.1126/science.1253435 · External reference
10.1038/s41586-024-07050-7
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10.1093/bioinformatics/bty560
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10.1038/s41586-024-07682-9 · External reference
10.1186/1471-2156-3-19
10.1186/1471-2156-3-19 · External reference
10.1007/s00122-016-2746-7
10.1007/s00122-016-2746-7 · External reference
10.1007/s10142-014-0391-2
10.1007/s10142-014-0391-2 · External reference
10.1093/gigascience/giab008
10.1093/gigascience/giab008 · External reference
10.1038/ng.806
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10.1038/nbt.3820
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10.1093/bioinformatics/btz901
10.1093/bioinformatics/btz901 · External reference
10.1038/s41588-022-01055-6
10.1038/s41588-022-01055-6 · External reference
10.1186/1471-2164-14-717
10.1186/1471-2164-14-717 · External reference
A new chromosome-scale genome of wild Brassica oleracea provides insights into the domestication of Brassica crops ed
10.1093/jxb/erae079 · 2024 · External reference
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10.1016/j.molp.2023.10.015
10.1016/j.molp.2023.10.015 · External reference
A comprehensive review of deep learning-based variant calling methods
10.1093/bfgp/elae003 · 2024 · External reference
10.1038/s41586-020-2308-7
10.1038/s41586-020-2308-7 · External reference
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10.1371/journal.pgen.0030022
10.1371/journal.pgen.0030022 · External reference
10.1093/dnares/dsu002
10.1093/dnares/dsu002 · External reference
10.1093/bioinformatics/btp324
10.1093/bioinformatics/btp324 · External reference
10.1093/bioinformatics/btp352
10.1093/bioinformatics/btp352 · External reference
10.1038/s41467-019-09134-9
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10.1101/gr.3531105
10.1101/gr.3531105 · External reference
10.1186/s13059-019-1659-6
10.1186/s13059-019-1659-6 · External reference
Variable Selection for Clustering with Gaussian Mixture Models
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10.1093/nar/gkv1344
10.1093/nar/gkv1344 · External reference
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10.1073/pnas.92.21.9717 · External reference
10.1007/pl00006224
10.1007/pl00006224 · External reference
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PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
10.1016/j.xgen.2022.100129 · 2022 · External reference
10.1007/s00438-009-0504-0
10.1007/s00438-009-0504-0 · External reference
10.1093/nar/gkae977
10.1093/nar/gkae977 · External reference
10.1038/nbt.4235
10.1038/nbt.4235 · External reference
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10.1016/j.molp.2017.06.008
10.1016/j.molp.2017.06.008 · External reference
10.1371/journal.pone.0162259
10.1371/journal.pone.0162259 · External reference
10.1007/s00438-005-0046-z
10.1007/s00438-005-0046-z · External reference
10.1093/gigascience/giaa137
10.1093/gigascience/giaa137 · External reference
10.21105/joss.00026 · 2016 · Admitted local publication
CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat
10.1111/tpj.14194 · 2019 · External reference
Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data
10.3390/plants9040439 · 2020 · External reference
The Wheat 660K SNP array demonstrates great potential for marker-assisted selection in polyploid wheat
10.1111/pbi.13361 · 2020 · External reference
Reconciliation of wheat 660K and 90K SNP arrays and their utilization in dough rheological properties of bread wheat
10.1016/j.jare.2025.01.011 · 2025 · External reference
Genome-wide association study for 13 agronomic traits reveals distribution of superior alleles in bread wheat from the Yellow and Huai Valley of China
10.1111/pbi.12690 · 2017 · External reference
10.1038/nature15393
10.1038/nature15393 · External reference
10.1016/j.jplph.2020.153351
10.1016/j.jplph.2020.153351 · External reference
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10.1002/0471250953.bi1110s43
10.1002/0471250953.bi1110s43 · External reference
10.1007/978-0-387-21706-2
10.1007/978-0-387-21706-2 · External reference
10.1093/bioinformatics/btu668
10.1093/bioinformatics/btu668 · External reference
10.1038/s41586-018-0063-9
10.1038/s41586-018-0063-9 · External reference
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10.1016/j.molp.2018.11.007
10.1016/j.molp.2018.11.007 · External reference
10.1186/s12864-019-6057-7
10.1186/s12864-019-6057-7 · External reference
BnaSNPDB: An interactive web portal for the efficient retrieval and analysis of SNPs among 1,007 rapeseed accessions
10.1016/j.csbj.2020.09.031 · 2020 · External reference
BnaGVD: A Genomic Variation Database of Rapeseed ( Brassica napus)
10.1093/pcp/pcaa169 · 2021 · External reference
10.1016/j.molp.2022.02.002
10.1016/j.molp.2022.02.002 · External reference
10.1016/j.molp.2023.03.007
10.1016/j.molp.2023.03.007 · External reference
10.1186/s12859-020-03704-1
10.1186/s12859-020-03704-1 · External reference
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Rice3K56 is a high-quality SNP array for genome-based genetic studies and breeding in rice (Oryza sativa L
10.1016/j.cj.2023.02.006 · 2023 · External reference
A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset
10.1186/s12915-024-01820-5 · 2024 · External reference
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