Research graph
References from Sketching the SRA: experiment-wide similarity search across 4.8 million metagenomes. Local targets link to admitted publications; unresolved targets remain external evidence.
Ultra-deep long-read metagenomics captures diverse taxonomic and biosynthetic potential of soil microbes
2025 · External reference
Dashing: fast and accurate genomic distances with HyperLogLog
2019 · External reference
Genomic sketching with multiplicities and locality-sensitive hashing using Dashing 2
2023 · External reference
The minimizer Jaccard estimator is biased and inconsistent
2022 · External reference
SimkaMin: fast and resource frugal de novo comparative metagenomics
2020 · External reference
Hash functions in nucleotide sequence analysis
2026 · External reference
10.1101/2024.07.30.605881
10.1101/2024.07.30.605881 · External reference
Petabase-scale sequence alignment catalyses viral discovery
2022 · External reference
Efficient storage and retrieval by content and address of static files
1974 · External reference
Metagenomic co-assembly uncovers mobile antibiotic resistance genes in airborne microbiomes
2025 · External reference
Unresolved reference
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10.1101/2023.11.06.565843
10.1101/2023.11.06.565843 · External reference
10.1101/2022.01.11.475838
10.1101/2022.01.11.475838 · External reference
sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets
2024 · External reference
Efficient and accurate search in petabase-scale sequence repositories
2025 · External reference
Increasing metadata coverage of SRA BioSample entries using deep learning–based named entity recognition
2021 · External reference
The sequence read archive
2010 · External reference
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
2015 · External reference
An integrated catalog of reference genes in the human gut microbiome
2014 · External reference
10.1016/j.crmeth.2025.101005
10.1016/j.crmeth.2025.101005 · External reference
10.1017/cbo9781316588284
10.1017/cbo9781316588284 · External reference
A genomic catalog of Earth”s microbiomes
2021 · External reference
10.1145/3580305.3599314
10.1145/3580305.3599314 · External reference
10.1038/s41564-026-02314-6
10.1038/s41564-026-02314-6 · External reference
Estimating similarity and distance using FracMinHash: MR Hera and D. Koslicki
2025 · External reference
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
2022 · External reference
Terabase-scale coassembly of a tropical soil microbiome
2023 · External reference
GenBank 2024 update
2024 · External reference
Fast and robust metagenomic sequence comparison through sparse chaining with skani
2023 · External reference
Rapid species-level metagenome profiling and containment estimation with sylph
2025 · External reference
Indexing and searching petabase-scale nucleotide resources
2024 · External reference
Fast splittable pseudorandom number generators
2014 · External reference
The person-to-person transmission landscape of the gut and oral microbiomes
2023 · External reference
10.1145/2433396.2433409
10.1145/2433396.2433409 · External reference
Unresolved reference
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HyperGen: compact and efficient genome sketching using hyperdimensional vectors
2024 · External reference
10.1101/2024.03.13.584875
10.1101/2024.03.13.584875 · External reference
