Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Research graph
References from GRASS-MIL: graph-based representation and discovery of phenotype-associated spatial structures with multiple instance learning. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.ccell.2023.01.010
10.1016/j.ccell.2023.01.010 · External reference
Spatial architecture of the immune microenvironment orchestrates tumor immunity and therapeutic response
10.1186/s13045-021-01103-4 · 2021 · External reference
10.1126/science.abq4964
10.1126/science.abq4964 · External reference
10.1016/j.cell.2018.07.010
10.1016/j.cell.2018.07.010 · External reference
Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry
10.1038/nmeth.2869 · 2014 · External reference
10.1126/science.aaa6090
10.1126/science.aaa6090 · External reference
10.1038/s41587-022-01483-z
10.1038/s41587-022-01483-z · External reference
Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples
10.1038/s41467-025-63414-1 · 2025 · External reference
10.1038/s41592-021-01358-2
10.1038/s41592-021-01358-2 · External reference
10.1201/b19708
10.1201/b19708 · External reference
10.1016/j.cell.2020.07.005
10.1016/j.cell.2020.07.005 · External reference
10.64898/2026.03.16.712056
10.64898/2026.03.16.712056 · External reference
Cell states and neighborhoods in distinct clinical stages of primary and metastatic esophageal adenocarcinoma
10.1016/j.xcrm.2025.102188 · 2025 · External reference
Unresolved reference
External reference
Data-efficient and weakly supervised computational pathology on whole-slide images
10.1038/s41551-020-00682-w · 2021 · External reference
Unresolved reference
External reference
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
10.1038/s41592-021-01255-8 · 2021 · External reference
Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder
10.1038/s41467-022-29439-6 · 2022 · External reference
Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST
10.1038/s41467-023-36796-3 · 2023 · External reference
10.1093/nar/gkac901
10.1093/nar/gkac901 · External reference
Unsupervised spatially embedded deep representation of spatial transcriptomics
10.1186/s13073-024-01283-x · 2024 · External reference
Identifying multicellular spatiotemporal organization of cells with SpaceFlow
10.1038/s41467-022-31739-w · 2022 · External reference
Annotation of spatially resolved single-cell data with STELLAR
10.1038/s41592-022-01651-8 · 2022 · External reference
Nicheformer: a foundation model for single-cell and spatial omics
10.1038/s41592-025-02814-z · 2025 · External reference
Novae: a graph-based foundation model for spatial transcriptomics data
10.1038/s41592-025-02899-6 · 2025 · External reference
10.1101/2025.02.05.636714
10.1101/2025.02.05.636714 · External reference
AI-powered virtual tissues from spatial proteomics for clinical diagnostics and biomedical discovery
2025 · External reference
Graph deep learning for the characterization of tumour microenvironments from spatial protein profiles in tissue specimens
10.1038/s41551-022-00951-w · 2022 · External reference
Cell graph neural networks enable the precise prediction of patient survival in gastric cancer
10.1038/s41698-022-00285-5 · 2022 · External reference
Graph neural networks learn emergent tissue properties from spatial molecular profiles
10.1038/s41467-025-63758-8 · 2025 · External reference
10.1101/2023.12.30.573739
10.1101/2023.12.30.573739 · External reference
Unsupervised and supervised discovery of tissue cellular neighborhoods from cell phenotypes
10.1038/s41592-023-02124-2 · 2024 · External reference
SpaCEy links spatial tissue patterns to clinical outcomes using explainable graph neural networks
10.1038/s41467-026-77924-z · 2026 · External reference
Unresolved reference
External reference
Large-Scale Representation Learning on Graphs via Bootstrapping
2021 · External reference
10.1007/978-3-642-37456-2_14
10.1007/978-3-642-37456-2_14 · External reference
10.1080/00401706.1994.10485840
10.1080/00401706.1994.10485840 · External reference
10.1016/j.neucom.2011.06.033
10.1016/j.neucom.2011.06.033 · External reference
10.1093/biomet/37.1-2.17
10.1093/biomet/37.1-2.17 · External reference
10.1111/j.2517-6161.1977.tb01615.x
10.1111/j.2517-6161.1977.tb01615.x · External reference
10.1038/s41590-024-01943-5
10.1038/s41590-024-01943-5 · External reference
Cancer-associated fibroblasts induce antigen-specific deletion of CD8+ T cells to protect tumour cells
10.1038/s41467-018-03347-0 · 2018 · External reference
10.1158/1541-7786.mcr-17-0594
10.1158/1541-7786.mcr-17-0594 · External reference
Dynamics of the tumor immune microenvironment during neoadjuvant chemotherapy of high-grade serous ovarian cancer
10.3390/cancers14092308 · 2022 · External reference
10.1016/j.ccell.2023.12.021
10.1016/j.ccell.2023.12.021 · External reference
Cancer-associated fibroblast classification in single-cell and spatial proteomics data
10.1038/s41467-023-39762-1 · 2023 · External reference
10.21037/tlcr-2025-477
10.21037/tlcr-2025-477 · External reference
Density of tertiary lymphoid structures and their correlation with prognosis in non-small cell lung cancer
10.3389/fimmu.2024.1423775 · 2024 · External reference
10.18632/oncotarget.12360
10.18632/oncotarget.12360 · External reference
Predictive clinical outcome of the intratumoral CD66b-positive neutrophil-to-CD8-positive T-cell ratio in patients with resectable nonsmall cell lung cancer
2011 · External reference
10.1371/journal.pone.0163397
10.1371/journal.pone.0163397 · External reference
10.1200/jco.2007.15.0284
10.1200/jco.2007.15.0284 · External reference
10.1038/s41586-022-05672-3
10.1038/s41586-022-05672-3 · External reference
10.18653/v1/n19-1357
10.18653/v1/n19-1357 · External reference
10.1126/science.1217405
10.1126/science.1217405 · External reference
Inferring biological tasks using Pareto analysis of high-dimensional data
10.1038/nmeth.3254 · 2015 · External reference
Continuum of gene-expression profiles provides spatial division of labor within a differentiated cell type
10.1016/j.cels.2018.12.008 · 2019 · External reference
Unresolved reference
External reference
10.1101/2025.09.23.678050
10.1101/2025.09.23.678050 · External reference
Decoupled Weight Decay Regularization
2017 · External reference
Unresolved reference
External reference
Fast Graph Representation Learning with PyTorch Geometric
2019 · External reference
10.1186/s13059-017-1382-0
10.1186/s13059-017-1382-0 · External reference
Scikit-learn: Machine Learning in Python
2011 · External reference