Research graph
References from genomeRxiv: a genome-based identification web server that bridges the gap between taxonomy and strain typing. Local targets link to admitted publications; unresolved targets remain external evidence.
Clade-specific adaptation and global spread of Staphylococcus aureus ST188 with emergence of a multidrug-resistant MRSA sublineage
10.1128/msystems.00848-25 · 2026 · External reference
Time-calibrated phylogenetic and chromosomal mobilome analyses of Staphylococcus aureus CC398 reveal geographical and host-related evolution
10.1038/s41467-024-49644-9 · 2024 · External reference
International trade and local effects of viral and bacterial diseases in ornamental plants
10.1146/annurev-phyto-021621-114618 · 2023 · External reference
Guidance on the characterisation of microorganisms in support of the risk assessment of products used in the food chain
10.2903/j.efsa.2025.9705 · 2025 · External reference
10.1159/000538002
10.1159/000538002 · External reference
10.1093/nar/gkae1038
10.1093/nar/gkae1038 · External reference
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10.1093/bioinformatics/btac672
10.1093/bioinformatics/btac672 · External reference
10.1038/s41467-019-10210-3
10.1038/s41467-019-10210-3 · External reference
10.1128/jcm.00081-16
10.1128/jcm.00081-16 · External reference
10.1093/nar/gkae902
10.1093/nar/gkae902 · External reference
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10.1038/nrmicro3093
10.1038/nrmicro3093 · External reference
HierCC: a multi-level clustering scheme for population assignments based on core genome MLST
10.1093/bioinformatics/btab234 · 2021 · External reference
10.1093/molbev/msac135
10.1093/molbev/msac135 · External reference
Genotypic and phenotypic analyses show Ralstonia solanacearum cool virulence is a quantitative trait not restricted to ‘race 3 biovar 2’
10.1094/phyto-06-24-0187-r · 2024 · External reference
10.1371/journal.pone.0089142
10.1371/journal.pone.0089142 · External reference
10.1094/phyto-07-16-0252-r
10.1094/phyto-07-16-0252-r · External reference
10.1007/s10482-017-0849-z
10.1007/s10482-017-0849-z · External reference
10.1099/ijs.0.64483-0
10.1099/ijs.0.64483-0 · External reference
10.1038/s41467-018-07641-9
10.1038/s41467-018-07641-9 · External reference
10.1128/mbio.02696-23
10.1128/mbio.02696-23 · External reference
10.1128/msystems.00143-24
10.1128/msystems.00143-24 · External reference
10.3389/fmicb.2023.1254999
10.3389/fmicb.2023.1254999 · External reference
10.1099/mgen.0.000791
10.1099/mgen.0.000791 · External reference
LINflow: a computational pipeline that combines an alignment-free with an alignment-based method to accelerate generation of similarity matrices for prokaryotic genomes
10.7717/peerj.10906 · 2021 · External reference
sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets
10.21105/joss.06830 · 2024 · External reference
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10.1093/nar/gkaa190
10.1093/nar/gkaa190 · External reference
Unresolved reference
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10.1099/mic.0.000425
10.1099/mic.0.000425 · External reference
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GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes
10.1093/nar/gkaf1040 · 2026 · External reference
10.1101/2023.12.20.572685
10.1101/2023.12.20.572685 · External reference
An antibacterial compound pyrimidomycin produced by Streptomyces sp. PSAA01 isolated from soil of Eastern Himalayan foothill
10.1038/s41598-022-14549-4 · 2022 · External reference
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Mashpit: sketching out genomic epidemiology
10.21105/joss.07306 · 2024 · External reference
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10.1101/2022.01.11.475838
10.1101/2022.01.11.475838 · External reference
PhyloJS: Bridging phylogenetics and web development with a JavaScript utility library
10.1002/ece3.11603 · 2024 · External reference
10.1093/gigascience/giz119
10.1093/gigascience/giz119 · External reference
10.1099/mgen.0.000685
10.1099/mgen.0.000685 · External reference
10.1093/molbev/msaa015
10.1093/molbev/msaa015 · External reference
10.7717/peerj.16505
10.7717/peerj.16505 · External reference