Research graph
References from A perturbation atlas of mouse neural organoids resolves macroglial reactivity and nominates drivers of degeneration. Local targets link to admitted publications; unresolved targets remain external evidence.
Conservation of Regional Gene Expression in Mouse and Human Brain
10.1371/journal.pgen.0030059 · 2007 · External reference
10.1038/s41586-019-1338-5
10.1038/s41586-019-1338-5 · External reference
10.1016/j.devcel.2020.04.009
10.1016/j.devcel.2020.04.009 · External reference
10.1126/science.adf1226
10.1126/science.adf1226 · External reference
10.1016/j.cell.2017.05.018
10.1016/j.cell.2017.05.018 · External reference
10.1038/s41593-020-0624-8
10.1038/s41593-020-0624-8 · External reference
10.1126/science.aat0473
10.1126/science.aat0473 · External reference
10.1159/000328979
10.1159/000328979 · External reference
The retina as a window to the brain—from eye research to CNS disorders
10.1038/nrneurol.2012.227 · 2013 · External reference
10.1038/nrg2717
10.1038/nrg2717 · External reference
10.1016/j.cell.2022.12.032
10.1016/j.cell.2022.12.032 · External reference
10.1038/s41586-023-06564-w
10.1038/s41586-023-06564-w · External reference
10.1016/j.neuron.2026.02.024
10.1016/j.neuron.2026.02.024 · External reference
Systematic scRNA-seq screens profile neural organoid response to morphogens
10.1038/s41592-025-02927-5 · 2026 · External reference
10.1038/nature22047
10.1038/nature22047 · External reference
10.1038/nature22330
10.1038/nature22330 · External reference
10.1038/s41586-019-1654-9
10.1038/s41586-019-1654-9 · External reference
10.1038/s41586-022-05279-8
10.1038/s41586-022-05279-8 · External reference
10.1016/j.devcel.2022.02.018
10.1016/j.devcel.2022.02.018 · External reference
Generation of cerebral organoids from human pluripotent stem cells
10.1038/nprot.2014.158 · 2014 · External reference
10.1016/j.cell.2015.06.034
10.1016/j.cell.2015.06.034 · External reference
10.1038/s41586-021-04358-6
10.1038/s41586-021-04358-6 · External reference
10.1038/s41593-023-01477-3
10.1038/s41593-023-01477-3 · External reference
10.1101/2025.08.02.668295
10.1101/2025.08.02.668295 · External reference
10.1038/s41586-024-08172-8
10.1038/s41586-024-08172-8 · External reference
10.1038/nbt.4127
10.1038/nbt.4127 · External reference
10.1038/s41586-022-05277-w
10.1038/s41586-022-05277-w · External reference
10.1101/2025.10.01.679721
10.1101/2025.10.01.679721 · External reference
10.1016/s0306-4522(01)00171-3
10.1016/s0306-4522(01)00171-3 · External reference
10.1016/j.stem.2008.09.002
10.1016/j.stem.2008.09.002 · External reference
10.1038/nature09941
10.1038/nature09941 · External reference
10.64898/2026.03.17.712213
10.64898/2026.03.17.712213 · External reference
10.1242/dev.200561
10.1242/dev.200561 · External reference
A mouse organoid platform for modeling cerebral cortex development and cis-regulatory evolution in vitro
10.1016/j.devcel.2025.08.001 · 2025 · External reference
Unresolved reference
External reference
10.1101/2024.10.02.616236
10.1101/2024.10.02.616236 · External reference
Establishing mouse forebrain organoids as models of intrinsic cortical network assembly
10.1016/j.stemcr.2026.102832 · 2026 · External reference
Unresolved reference
External reference
10.1038/s41586-019-1289-x
10.1038/s41586-019-1289-x · External reference
10.1242/dev.144071
10.1242/dev.144071 · External reference
10.1016/j.cell.2016.04.032
10.1016/j.cell.2016.04.032 · External reference
10.1038/nn.2638
10.1038/nn.2638 · External reference
Derivation of Traceable and Transplantable Photoreceptors from Mouse Embryonic Stem Cells
10.1016/j.stemcr.2014.04.010 · 2014 · External reference
Retinal Organoids from Pluripotent Stem Cells Efficiently Recapitulate Retinogenesis
10.1016/j.stemcr.2016.03.001 · 2016 · External reference
Unresolved reference
External reference
10.1016/j.stem.2025.12.013
10.1016/j.stem.2025.12.013 · External reference
10.1101/2025.07.25.666895
10.1101/2025.07.25.666895 · External reference
10.1038/s41583-019-0196-3
10.1038/s41583-019-0196-3 · External reference
10.1038/s41586-021-03775-x
10.1038/s41586-021-03775-x · External reference
10.1016/j.neuron.2019.04.010
10.1016/j.neuron.2019.04.010 · External reference
Comparing the transcriptome of developing native and iPSC-derived mouse retinae by single cell RNA sequencing
10.1038/s41598-023-28429-y · 2023 · External reference
10.3390/cells8020184
10.3390/cells8020184 · External reference
10.1016/j.neuroscience.2004.11.020
10.1016/j.neuroscience.2004.11.020 · External reference
Depression of retinal glutamate transporter function leads to elevated intravitreal glutamate levels and ganglion cell death
2000 · External reference
10.1101/cshperspect.a008391
10.1101/cshperspect.a008391 · External reference
Taurine and Astrocytes: A Homeostatic and Neuroprotective Relationship
10.3389/fnmol.2022.937789 · 2022 · External reference
10.1007/s11064-008-9772-z
10.1007/s11064-008-9772-z · External reference
10.1523/jneurosci.0345-15.2015
10.1523/jneurosci.0345-15.2015 · External reference
10.1111/brv.12140
10.1111/brv.12140 · External reference
Metabolic and redox signaling in the retina
10.1007/s00018-016-2318-7 · 2017 · External reference
10.1021/cr400107q
10.1021/cr400107q · External reference
Tracking axonal action potential propagation on a high-density microelectrode array across hundreds of sites
10.1038/ncomms3181 · 2013 · External reference
10.1126/science.abb2153
10.1126/science.abb2153 · External reference
10.7554/elife.78811
10.7554/elife.78811 · External reference
10.1073/pnas.0907660106
10.1073/pnas.0907660106 · External reference
10.1557/s43577-022-00282-w
10.1557/s43577-022-00282-w · External reference
Functional neuronal circuitry and oscillatory dynamics in human brain organoids
10.1038/s41467-022-32115-4 · 2022 · External reference
Preconfigured neuronal firing sequences in human brain organoids
10.1038/s41593-025-02111-0 · 2026 · External reference
IFNβ secreted by microglia mediates clearance of myelin debris in CNS autoimmunity
10.1186/s40478-015-0192-4 · 2015 · External reference
10.1177/1352458506070763
10.1177/1352458506070763 · External reference
10.1002/glia.23154
10.1002/glia.23154 · External reference
10.1111/febs.16272
10.1111/febs.16272 · External reference
10.1038/nrd1330
10.1038/nrd1330 · External reference
10.1016/j.cell.2019.1004.1001
10.1016/j.cell.2019.1004.1001 · External reference
10.1111/imm.12922
10.1111/imm.12922 · External reference
10.1016/j.preteyeres.2009.07.001
10.1016/j.preteyeres.2009.07.001 · External reference
10.1038/s41593-020-00783-4
10.1038/s41593-020-00783-4 · External reference
Functional roles of reactive astrocytes in neuroinflammation and neurodegeneration
10.1038/s41582-023-00822-1 · 2023 · External reference
10.1038/s41593-021-00905-6
10.1038/s41593-021-00905-6 · External reference
10.1038/s41590-023-01437-w
10.1038/s41590-023-01437-w · External reference
10.1038/nature21029
10.1038/nature21029 · External reference
10.1038/s41593-022-01180-9
10.1038/s41593-022-01180-9 · External reference
10.1038/s41586-022-04739-5
10.1038/s41586-022-04739-5 · External reference
Modeling inducible neuropathologies of the retina with differential phenotypes in organoids
10.3389/fncel.2023.1106287 · 2023 · External reference
HBEGF-TNF induce a complex outer retinal pathology with photoreceptor cell extrusion in human organoids
10.1038/s41467-022-33848-y · 2022 · External reference
10.1126/sciadv.adn2091
10.1126/sciadv.adn2091 · External reference
10.1038/nature23283
10.1038/nature23283 · External reference
10.1126/sciadv.abq7219
10.1126/sciadv.abq7219 · External reference
A multiplexed, single-cell sequencing screen identifies compounds that increase neurogenic reprogramming of murine Muller glia
10.7554/elife.92091.3 · 2024 · External reference
10.1016/s1097-2765(03)00105-9
10.1016/s1097-2765(03)00105-9 · External reference
10.1074/jbc.ra118.004459
10.1074/jbc.ra118.004459 · External reference
10.1371/journal.pone.0015495
10.1371/journal.pone.0015495 · External reference
Single-cell RNA sequencing of the retina in a model of retinitis pigmentosa reveals early responses to degeneration in rods and cones
10.1186/s12915-022-01280-9 · 2022 · External reference
The clinical relevance of OSM in inflammatory diseases: a comprehensive review
10.3389/fimmu.2023.1239732 · 2023 · External reference
TNF biology, pathogenic mechanisms and emerging therapeutic strategies
10.1038/nrrheum.2015.169 · 2016 · External reference
10.1016/j.ajpath.2018.07.016
10.1016/j.ajpath.2018.07.016 · External reference
Oncostatin M and Leukemia Inhibitory Factor Do Not Use the Same Functional Receptor in Mice
10.1182/blood.v90.1.165.165_165_173 · 1997 · External reference
10.1074/jbc.m116.748483
10.1074/jbc.m116.748483 · External reference
10.1158/1535-7163.mct-13-0464
10.1158/1535-7163.mct-13-0464 · External reference
10.1056/nejmoa1110557
10.1056/nejmoa1110557 · External reference
Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations
10.3390/cells9020438 · 2020 · External reference
10.1038/s41586-019-1195-2
10.1038/s41586-019-1195-2 · External reference
10.1167/iovs.17-23678
10.1167/iovs.17-23678 · External reference
10.31083/j.fbl2706169
10.31083/j.fbl2706169 · External reference
10.1371/journal.pone.0018282
10.1371/journal.pone.0018282 · External reference
10.1167/iovs.65.4.22
10.1167/iovs.65.4.22 · External reference
10.1126/sciadv.adk9884
10.1126/sciadv.adk9884 · External reference
Protective effect of clusterin on rod photoreceptor in rat model of retinitis pigmentosa
10.1371/journal.pone.0182389 · 2017 · External reference
10.1523/jneurosci.22-13-05334.2002
10.1523/jneurosci.22-13-05334.2002 · External reference
10.1096/fj.06-5850fje
10.1096/fj.06-5850fje · External reference
Endoplasmic reticulum stress: molecular mechanism and therapeutic targets
10.1038/s41392-023-01570-w · 2023 · External reference
ATF3 prevents retinal ganglion cell apoptosis and mitigates microgliamediated neuroinflammation in retinal ischemia–reperfusion injury
10.3389/fimmu.2025.1671204 · 2025 · External reference
Chromogranin A promotes the pathological conversion of α-synuclein at the synapse in Parkinson’s disease
10.1016/j.celrep.2025.116562 · 2025 · External reference
10.1111/nan.12961
10.1111/nan.12961 · External reference
10.1101/gad.289256.116
10.1101/gad.289256.116 · External reference
Generation and long-term culture of advanced cerebral organoids for studying later stages of neural development
10.1038/s41596-020-00433-w · 2021 · External reference
In vitro modeling of the human dopaminergic system using spatially arranged ventral midbrain–striatum–cortex assembloids
10.1038/s41592-023-02080-x · 2023 · External reference
Deep generative modeling for single-cell transcriptomics
10.1038/s41592-018-0229-2 · 2018 · External reference
10.1186/s13059-017-1382-0
10.1186/s13059-017-1382-0 · External reference
10.15252/msb.20209620
10.15252/msb.20209620 · External reference
Scanpro is a tool for robust proportion analysis of single-cell resolution data
10.1038/s41598-024-66381-7 · 2024 · External reference
CellRank 2: unified fate mapping in multiview single-cell data
10.1038/s41592-024-02303-9 · 2024 · External reference
10.1016/j.crmeth.2026.101419
10.1016/j.crmeth.2026.101419 · External reference
10.1111/j.1600-0404.1970.tb05606.x
10.1111/j.1600-0404.1970.tb05606.x · External reference
10.1021/ac201267k
10.1021/ac201267k · External reference
10.1038/nbt.2377
10.1038/nbt.2377 · External reference
10.1093/nar/gkab1062
10.1093/nar/gkab1062 · External reference
10.1021/ac500472c
10.1021/ac500472c · External reference
10.1101/061481
10.1101/061481 · External reference
10.1126/science.abf4588
10.1126/science.abf4588 · External reference
10.1038/nn.4268
10.1038/nn.4268 · External reference
An automated method for precise axon reconstruction from recordings of high-density micro-electrode arrays
10.1088/1741-2552/ac59a2 · 2022 · External reference