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References from Benchmarking single-cell foundation models reveals an advantage in the low-data regime for cell-type and disease-state prediction. Local targets link to admitted publications; unresolved targets remain external evidence.
10.18653/v1/n19-1423
10.18653/v1/n19-1423 · External reference
scGPT: toward building a foundation model for single-cell multi-omics using generative AI
10.1038/s41592-024-02201-0 · 2024 · External reference
10.1038/s41586-023-06139-9
10.1038/s41586-023-06139-9 · External reference
Benchmarking biomedical foundation models
10.1038/s41592-026-03182-y · 2026 · External reference
10.1038/s43588-026-00972-4
10.1038/s43588-026-00972-4 · External reference
TranscriptFormer: A generative cell atlas across 1.5 billion years of evolution
10.1126/science.aec8514 · 2026 · External reference
10.1101/2025.10.31.685892
10.1101/2025.10.31.685892 · External reference
Deeper evaluation of a single-cell foundation model
10.1038/s42256-024-00949-w · 2024 · External reference
10.1186/s13059-025-03574-x
10.1186/s13059-025-03574-x · External reference
10.64898/2026.02.11.705358
10.64898/2026.02.11.705358 · External reference
Deep generative modeling for single-cell transcriptomics
10.1038/s41592-018-0229-2 · 2018 · External reference
Unresolved reference
External reference
10.1093/nar/gkae1142
10.1093/nar/gkae1142 · External reference
10.1080/03610928008827904
10.1080/03610928008827904 · External reference
10.1016/0005-2795(75)90109-9
10.1016/0005-2795(75)90109-9 · External reference
10.1038/s41586-025-10014-0
10.1038/s41586-025-10014-0 · External reference
A systematic analysis of performance measures for classification tasks
10.1016/j.ipm.2009.03.002 · 2009 · External reference
10.1186/s12864-019-6413-7
10.1186/s12864-019-6413-7 · External reference
Statistical comparisons of classifiers over multiple data sets
2006 · External reference
Should we really use post-hoc tests based on mean-ranks?
2016 · External reference
Unresolved reference
External reference
