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References from Soil extracellular DNA fragments show variable degradation rates among sequences and environmental conditions. Local targets link to admitted publications; unresolved targets remain external evidence.
Back to basics--the influence of DNA extraction and primer choice on phylogenetic analysis of activated sludge communities
10.1371/journal.pone.0132783 · 2015 · External reference
A new method for non‐parametric multivariate analysis of variance
10.1111/j.1442-9993.2001.01070.pp.x · 2001 · External reference
E7HPV16 oncogene and 17beta-estradiol stress, promotes oncogenic microRNA expression patterns, cell proliferation and cervical intraepithelial neoplasia 1
10.1002/cbf.70065 · 2025 · External reference
Environmental conditions influence eDNA persistence in aquatic systems
10.1021/es404734p · 2014 · External reference
Microbial enzymes for soil health
10.1007/978-981-99-9482-3_6 · 2024 · External reference
Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil
10.1038/s41396-020-0617-3 · 2020 · External reference
Random forests
10.1023/a:1010933404324 · 2001 · External reference
Unresolved reference
2020 · External reference
Impact of DNA methylation on 3D genome structure
10.1038/s41467-021-23142-8 · 2021 · External reference
Interactions of DNA with clay minerals and soil colloidal particles and protection against degradation by DNase
10.1021/es0522985 · 2006 · External reference
Adsorption of DNA on clay minerals and various colloidal particles from an Alfisol
10.1016/j.soilbio.2005.05.019 · 2006 · External reference
Dead or alive: molecular assessment of microbial viability
10.1128/aem.01763-14 · 2014 · External reference
Antarctic rock and soil microbiomes: shared taxa, selective pressures, and extracellular DNA effects
10.1016/j.geoderma.2024.116918 · 2024 · External reference
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
10.1073/pnas.1000080107 · 2011 · External reference
Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
10.1038/nmicrobiol.2016.242 · 2016 · External reference
In-field detection and quantification of extracellular DNA
10.1002/jpln.200900081 · 2009 · External reference
Long-term warming rather than grazing significantly changed total and active soil procaryotic community structures
10.1016/j.geoderma.2017.12.005 · 2018 · External reference
Degraded patch formation significantly changed microbial community composition in alpine meadow soils
10.1016/j.still.2019.104426 · 2019 · External reference
Soil microbial biogeography in a changing world: recent advances and future perspectives
10.1128/msystems.00803-19 · 2020 · External reference
The adsorption of short single-stranded DNA oligomers to mineral surfaces
10.1016/j.chemosphere.2011.01.023 · 2011 · External reference
Random forests
10.1007/978-1-4419-9326-7_5 · 2012 · External reference
Influence of DNA from non-viable sources on the riverine water and biofilm microbiome, resistome, mobilome, and resistance gene host assignments
10.1016/j.jhazmat.2023.130743 · 2023 · External reference
Using high-throughput sequencing quantitatively to investigate soil nematode community composition in a steppe-forest ecotone
10.1016/j.apsoil.2020.103562 · 2020 · External reference
The performance of different methods in characterizing soil live prokaryotic diversity and abundance is highly variable
10.1002/imo2.70011 · 2025 · External reference
UPARSE: highly accurate OTU sequences from microbial amplicon reads
10.1038/nmeth.2604 · 2013 · External reference
Effects of temperature and trophic state on degradation of environmental DNA in lake water
10.1021/acs.est.5b05672 · 2016 · External reference
Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems
10.1186/s40168-017-0285-3 · 2017 · External reference
DNA as a nutrient: novel role for bacterial competence gene homologs
10.1128/jb.183.21.6288-6293.2001 · 2001 · External reference
Quantification of bias related to the extraction of DNA directly from soils
10.1128/aem.65.12.5409-5420.1999 · 1999 · External reference
10.1017/cbo9780511617799
10.1017/cbo9780511617799 · 2006 · External reference
Hmisc: harrell miscellaneous
2020 · External reference
Straw addition and low soil moisture decreased temperature sensitivity and activation energy of soil organic matter
10.1016/j.geoderma.2024.116802 · 2024 · External reference
Propidium monoazide treatment to distinguish between live and dead methanogens in pure cultures and environmental samples
10.1016/j.mimet.2015.12.002 · 2016 · External reference
FOXM1c promotes pancreatic cancer epithelial-to-mesenchymal transition and metastasis via upregulation of expression of the urokinase plasminogen activator system
10.1158/1078-0432.ccr-13-2311 · 2014 · External reference
Best practices for analysing microbiomes
10.1038/s41579-018-0029-9 · 2018 · External reference
Nonmetric multidimensional scaling: a numerical method
10.1007/bf02289694 · 1964 · External reference
piecewiseSEM: Piecewise structural equation modelling in r for ecology, evolution, and systematics
10.1111/2041-210x.12512 · 2016 · External reference
How, when, and where relic DNA affects microbial diversity
10.1128/mbio.00637-18 · 2018 · External reference
Cycling of extracellular DNA in the soil environment
10.1016/j.soilbio.2007.06.020 · 2007 · External reference
Soil sample sizes for DNA extraction substantially affect the examination of microbial diversity and co-occurrence patterns but not abundance
10.1016/j.soilbio.2022.108902 · 2023 · External reference
16S-rrna-genes-rates
2026 · External reference
The degradation of subalpine meadows significantly changed the soil microbiome
10.1016/j.agee.2023.108470 · 2023 · External reference
Natural organic matter enhances natural transformation of extracellular antibiotic resistance genes in sunlit water
10.1021/acs.est.4c08211 · 2024 · External reference
The detection of disease clustering and a generalized regression approach
1967 · External reference
Sequence specificity of BAL 31 nuclease for ssDNA revealed by synthetic oligomer substrates containing homopolymeric guanine tracts
10.1371/journal.pone.0003595 · 2008 · External reference
Influence of environmental conditions on extracellular and intracellular antibiotic resistance genes in manure‐amended soil: a microcosm study
10.1002/saj2.20049 · 2020 · External reference
Dynamics of extracellular DNA decomposition and bacterial community composition in soil
10.1016/j.soilbio.2015.03.020 · 2015 · External reference
Extracellular DNA in natural environments: features, relevance and applications
10.1007/s00253-018-9120-4 · 2018 · External reference
Degradation and deactivation of a plasmid-encoded extracellular antibiotic resistance gene during separate and combined exposures to UV254 and radicals
10.1016/j.watres.2020.115921 · 2020 · External reference
Use of propidium monoazide for live/dead distinction in microbial ecology
10.1128/aem.02987-06 · 2007 · External reference
Vegan: community ecology package
2021 · External reference
Unresolved reference
1954 · External reference
Adsorption of DNA on clay minerals: protection against DNaseI and influence on gene transfer
10.1111/j.1574-6968.1992.tb05435.x · 1992 · External reference
Preliminary evidences of the presence of extracellular DNA single stranded forms in soil
10.1371/journal.pone.0227296 · 2020 · External reference
Extracellular DNA in soil and sediment: fate and ecological relevance
10.1007/s00374-008-0345-8 · 2009 · External reference
Persistence of reptile DNA in a terrestrial substrate: a case study using the eastern indigo snake
10.1002/edn3.70053 · 2025 · External reference
Impact of soil moisture regimes on greenhouse gas emissions, soil microbial biomass, and enzymatic activity in long-term fertilized paddy soil
10.1186/s12302-024-00943-4 · 2024 · External reference
Accumulation of soil microbial extracellular and cellular residues during forest rewilding: Implications for soil carbon stabilization in older plantations
10.1016/j.soilbio.2023.109250 · 2024 · External reference
Factors governing extracellular DNA degradation dynamics in soil
10.1111/1758-2229.12725 · 2019 · External reference
Relic DNA effects on the estimates of bacterial community composition and taxa dynamics in soil
10.1007/s00253-023-12576-3 · 2023 · External reference
Characteristics of forest soil enzyme activities, nutrient restriction, and physicochemical properties at different altitudes and their seasonal dynamics
10.1134/s1064229324602117 · 2025 · External reference
Spatio-temporal microbial community dynamics within soil aggregates
10.1016/j.soilbio.2019.01.016 · 2019 · External reference
Preservation and significance of extracellular DNA in ferruginous sediments from Lake Towuti, Indonesia
10.3389/fmicb.2017.01440 · 2017 · External reference
Improved bacterial 16S rRNA Gene (V4 and V4-5) and fungal internal transcribed spacer marker gene primers for microbial community surveys
10.1128/msystems.00009-15 · 2016 · External reference
Structural basis for sequence-dependent DNA cleavage by nonspecific endonucleases
10.1093/nar/gkl621 · 2007 · External reference
Assessing soil extracellular DNA decomposition dynamics through plasmid amendment coupled with real-time PCR
10.1007/s11368-018-2176-z · 2019 · External reference
Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach
10.1186/s40168-020-00961-3 · 2021 · External reference
The effects of climate and soil depth on living and dead bacterial communities along a longitudinal gradient in Chile
10.1016/j.scitotenv.2024.173846 · 2024 · External reference
A review of distribution and functions of extracellular DNA in the environment and wastewater treatment systems
10.1016/j.chemosphere.2024.142264 · 2024 · External reference
Decoding the impact of relic DNA on soil microbiomes: a new soil relic DNA removal method
10.1007/s42832-024-0263-1 · 2025 · External reference
A microcosm study of surface sediment environmental DNA: decay observation, abundance estimation, and fragment length comparison
10.1021/acs.est.8b04956 · 2018 · External reference
Regional and single nucleotide correction of sequence bias in chromatin accessibility data
10.1096/fasebj.2022.36.s1.l7579 · 2022 · External reference
Relic DNA obscures DNA-based profiling of multiple microbial taxonomic groups in a river-reservoir ecosystem
10.1111/mec.17071 · 2023 · External reference
Relic DNA obscures bacterial diversity and interactions in ballast tank sediment
10.1016/j.envres.2024.120715 · 2025 · External reference
LncRNA UCA1 promotes development of gastric cancer via the miR-145/MYO6 axis
10.1186/s11658-021-00275-8 · 2021 · External reference
Artificial sweetener enhances the spread of antibiotic resistance genes during anaerobic digestion
10.1021/acs.est.2c08673 · 2023 · External reference
Dynamics, gene transfer, and ecological function of intracellular and extracellular DNA in environmental microbiome
10.1002/imt2.34 · 2022 · External reference
Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes
10.1111/gcb.13080 · 2016 · External reference
Influence of stalk residue retention and fertilization on the rhizospheric effect with drip‐irrigated cotton
10.2134/agronj2018.07.0447 · 2019 · External reference
Unrecognized contributions of dissolved organic matter inducing photodamages to the decay of extracellular DNA in waters
10.1021/acs.est.9b06029 · 2020 · External reference
Decades of reforestation significantly change microbial necromass, glomalin, and their contributions to soil organic carbon
10.1016/j.agee.2023.108362 · 2023 · External reference
Reforestation substantially changed the soil antibiotic resistome and its relationships with metal resistance genes, mobile genetic elements, and pathogens
10.1016/j.jenvman.2023.118037 · 2023 · External reference
The taxon-specific degradation of soil extracellular 16S rRNA genes: rates, influential factors, and implications
2025 · External reference