Research graph
References from Fungus above us: exploring the atmospheric mycobiome by aircraft. Local targets link to admitted publications; unresolved targets remain external evidence.
Airborne DNA reveals predictable spatial and seasonal dynamics of fungi
10.1038/s41586-024-07658-9 · 2024 · External reference
First report of leaf spot of Sarcococca saligna caused by Paraconiothyrium brasiliense in Pakistan
10.1007/s42161-019-00449-6 · 2020 · External reference
Microbial ecology in the atmosphere: the last extreme environment
10.5772/intechopen.81650 · 2021 · External reference
The aeromicrobiome: the selective and dynamic outer-layer of the Earth’s microbiome
10.3389/fmicb.2023.1186847 · 2023 · External reference
Microbial population in cloud water at the Puy de Dôme: implications for the chemistry of clouds
10.1016/j.atmosenv.2005.04.002 · 2005 · External reference
Estimates of the spatially complete, observational-data-driven planetary boundary layer height over the contiguous United States
10.5194/amt-16-563-2023 · 2023 · External reference
Environmental DNA assessment of airborne plant and fungal seasonal diversity
10.1016/j.scitotenv.2020.140249 · 2020 · External reference
Challenges and opportunities of airborne metagenomics
10.1093/gbe/evv064 · 2015 · External reference
Temporal variability and effect of environmental variables on airborne bacterial communities in an urban area of Northern Italy
10.1007/s00253-012-4450-0 · 2013 · External reference
Arsenate resistant penicillium coffeae: a potential fungus for soil bioremediation
10.1007/s00128-014-1212-y · 2014 · External reference
Seasonal variability in bacterial and fungal diversity of the near-surface atmosphere
10.1021/es402970s · 2013 · External reference
Robustness of the Ljung–Box test and its rank equivalent
10.2139/ssrn.443560 · 2003 · External reference
10.1007/978-3-319-61575-2
10.1007/978-3-319-61575-2 · 2017 · External reference
The identification of fungi collected from the ceca of commercial poultry
10.3382/ps/pew486 · 2017 · External reference
A long-term survey unveils strong seasonal patterns in the airborne microbiome coupled to general and regional atmospheric circulations
10.1073/pnas.1812826115 · 2018 · External reference
Recognizing filamentous basidiomycetes as agents of human disease: a review
10.1093/mmy/myu047 · 2014 · External reference
Measuring biodiversity from DNA in the air
10.1016/j.cub.2021.11.064 · 2022 · External reference
The top 10 fungal pathogens in molecular plant pathology
10.1111/j.1364-3703.2011.00783.x · 2012 · External reference
Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications
10.1073/pnas.1212089110 · 2013 · External reference
Namco: a microbiome explorer
10.1099/mgen.0.000852 · 2022 · External reference
Geographical distribution of fungal plant pathogens in dust across the United States
10.3389/fevo.2019.00304 · 2019 · External reference
Multiscale airborne infectious disease transmission
10.1128/aem.02314-20 · 2021 · External reference
Vertical stratification of the air microbiome in the lower troposphere
10.1073/pnas.2117293119 · 2022 · External reference
UCHIME2: improved chimera prediction for amplicon sequencing (preprint)
10.1101/074252 · 2016 · External reference
A few Ascomycota taxa dominate soil fungal communities worldwide
10.1038/s41467-019-10373-z · 2019 · External reference
Investigating the culturable atmospheric fungal and bacterial microbiome in West Texas: implication of dust storms and origins of the air parcels
10.1093/femsmc/xtaa009 · 2021 · External reference
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
10.1073/pnas.1215210110 · 2012 · External reference
Isolation of Cryptococcus laurentii from Canada Goose guano in rural upstate New York
10.1007/s11046-006-0066-1 · 2006 · External reference
High diversity of fungi in air particulate matter
10.1073/pnas.0811003106 · 2009 · External reference
Local meteorological conditions, shape and desiccation influence dispersal capabilities for airborne microorganisms
10.1016/j.scitotenv.2021.146653 · 2021 · External reference
Fungal endophytes in seeds and needles of Pinus monticola
10.1016/j.mycres.2005.10.005 · 2006 · External reference
Xylaria necrophora, sp. nov. is an emerging root-associated pathogen responsible for taproot decline of soybean in the southern United States
10.1080/00275514.2020.1846965 · 2021 · External reference
Environmental sequencing provides reasonable estimates of the relative abundance of specific picoeukaryotes
10.1128/aem.00560-16 · 2016 · External reference
Sino-orbital fungal infection by tilletiopsis minor, a rare human pathogen, diagnosed by internal transcribed spacer sequencing
10.1097/iop.0000000000001186 · 2018 · External reference
Effects of meteorological factors on the composition of selected fungal spores in the air
10.1007/s10453-014-9347-1 · 2015 · External reference
Microbial communities in the tropical air ecosystem follow a precise diel cycle
10.1073/pnas.1908493116 · 2019 · External reference
Fungal diversity revisited: 2.2 to 3.8 million species
10.1128/microbiolspec.funk-0052-2016 · 2017 · External reference
Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive
10.1016/j.watres.2018.03.003 · 2018 · External reference
LotuS: an efficient and user-friendly OTU processing pipeline
10.1186/2049-2618-2-30 · 2014 · External reference
Fungal carbon sources in a pine forest: evidence from a 13C-labeled global change experiment
10.1016/j.funeco.2013.11.001 · 2014 · External reference
Sierra Nevada sweep: metagenomic measurements of bioaerosols vertically distributed across the troposphere
10.1038/s41598-020-69188-4 · 2020 · External reference
Drivers of the fungal spore bioaerosol budget: observational analysis and global modeling
10.5194/acp-21-4381-2021 · 2021 · External reference
Macrobial airborne environmental DNA analysis: a review of progress, challenges, and recommendations for an emerging application
10.1111/1755-0998.13998 · 2024 · External reference
Towards a unified paradigm for sequence-based identification of fungi
10.1111/mec.12481 · 2013 · External reference
ITS alchemy: on the use of ITS as a DNA marker in fungal ecology
10.1016/j.funeco.2023.101274 · 2023 · External reference
Unveiling microbial life in new deep-sea hypersaline Lake Thetis. Part I: prokaryotes and environmental settings
10.1111/j.1462-2920.2011.02478.x · 2011 · External reference
The importance of neutral and niche processes for bacterial community assembly differs between habitat generalists and specialists
10.1093/femsec/fiw174 · 2016 · External reference
Whole-genome sequencing and functional annotation of pathogenic Paraconiothyrium brasiliense causing human cellulitis
10.1186/s40246-023-00512-5 · 2023 · External reference
Contribution of vegetation to the microbial composition of nearby outdoor air
10.1128/aem.00610-16 · 2016 · External reference
Bioaerosol sampling: classical approaches, advances, and perspectives
10.1080/02786826.2019.1671950 · 2020 · External reference
Vertical distribution of airborne microorganisms over forest environments: A potential source of ice-nucleating bioaerosols
10.1016/j.atmosenv.2023.119726 · 2023 · External reference
Characterization and pathogenicity of fungal species associated with dieback of apple trees in Northern Italy
10.1094/pdis-04-23-0645-re · 2024 · External reference
Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
10.1111/j.1365-294x.2009.04478.x · 2010 · External reference
Collecting micro-organisms from the Arctic atmosphere: with field notes and material
1935 · External reference
Aircraft surveys for air eDNA: probing biodiversity in the sky
10.7717/peerj.15171 · 2023 · External reference
Air microbiome and pollution: composition and potential effects on human health, including SARS coronavirus infection
10.1155/2020/1646943 · 2020 · External reference
Cutaneous Cryptococcus laurentii infection in an immunocompetent child
10.1016/j.ijid.2013.04.017 · 2013 · External reference
Microbiology and atmospheric processes: research challenges concerning the impact of airborne micro-organisms on the atmosphere and climate
10.5194/bg-8-17-2011 · 2011 · External reference
Seasonal variation of airborne fungal diversity and community structure in urban outdoor environments in Tianjin, China
10.3389/fmicb.2022.1043224 · 2023 · External reference
FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild
10.1016/j.funeco.2015.06.006 · 2016 · External reference
A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts
10.1264/jsme2.me14121 · 2015 · External reference
Seasonal changes dominate long-term variability of the urban air microbiome across space and time
10.1016/j.envint.2021.106423 · 2021 · External reference
Conifer species influence Heterobasidion irregulare sporulation on stem discs exposed to natural inoculum and root wood decay in soil-block tests
10.1111/efp.12381 · 2018 · External reference
Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species
10.3732/ajb.1400141 · 2014 · External reference
Global spore sampling project: A global, standardized dataset of airborne fungal DNA
10.1038/s41597-024-03410-0 · 2024 · External reference
LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis
10.1186/s40168-022-01365-1 · 2022 · External reference
FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
10.1007/s13225-020-00466-2 · 2020 · External reference
Dimensions of biodiversity in the Earth mycobiome
10.1038/nrmicro.2016.59 · 2016 · External reference
Spectrum of clinically relevant Acremonium species in the United States
10.1128/jcm.00793-10 · 2011 · External reference
Interhemispheric transport of viable fungi and bacteria from Africa to the Caribbean with soil dust
10.1007/s10453-004-5872-7 · 2005 · External reference
A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies
10.1093/nar/gkv1113 · 2016 · External reference
R: a language and environment for statistical computing
2024 · External reference
Air monitoring by nanopore sequencing
10.1093/ismeco/ycae099 · 2024 · External reference
Plant health and its effects on food safety and security in a One Health framework: four case studies
10.1186/s42522-021-00038-7 · 2021 · External reference
The aerobiome–health axis: a paradigm shift in bioaerosol thinking
10.1016/j.tim.2023.04.007 · 2023 · External reference
Biogeography, succession, and origin of the chicken intestinal mycobiome
10.1186/s40168-022-01252-9 · 2022 · External reference
Microbial richness and air chemistry in aerosols above the PBL confirm 2000-km long-distance transport of potential human pathogens
10.1073/pnas.2404191121 · 2024 · External reference
VSEARCH: a versatile open source tool for metagenomics
10.7717/peerj.2584 · 2016 · External reference
DNA metabarcoding of fungal diversity in air and snow of Livingston Island, South Shetland Islands, Antarctica
10.1038/s41598-020-78630-6 · 2020 · External reference
Comparison of commonly used software pipelines for analyzing fungal metabarcoding data
10.1186/s12864-024-11001-x · 2024 · External reference
Distribution of airborne pollen, fungi and bacteria at four altitudes using high-throughput DNA sequencing
10.1016/j.atmosres.2020.105306 · 2021 · External reference
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
10.1073/pnas.1117018109 · 2012 · External reference
Airborne Cladosporium fungal spores and climate change in France
10.1007/s10453-016-9422-x · 2016 · External reference
Free tropospheric transport of microorganisms from Asia to North America
10.1007/s00248-012-0088-9 · 2012 · External reference
Airborne bacteria in earth’s lower stratosphere resemble taxa detected in the troposphere: results from a new nasa aircraft bioaerosol collector(Abc)
10.3389/fmicb.2018.01752 · 2018 · External reference
Yeast ecology
10.1016/b978-0-444-52149-1.00006-9 · 2011 · External reference
The airborne mycobiome and associations with mycotoxins and inflammatory markers in the Norwegian grain industry
10.1038/s41598-021-88252-1 · 2021 · External reference
Microbial ecology of the atmosphere
10.1093/femsre/fuac009 · 2022 · External reference
A framework for human microbiome research
10.1038/nature11209 · 2012 · External reference
Seasonal shift in airborne microbial communities
10.1016/j.scitotenv.2020.137129 · 2020 · External reference
Fungal aerobiota are not affected by time nor environment over a 13-y time series at the Mauna Loa Observatory
10.1073/pnas.1907414116 · 2019 · External reference
DNA metabarcoding quantifies the relative biomass of arthropod taxa in songbird diets: validation with camera-recorded diets
10.1002/ece3.8881 · 2022 · External reference
Fungal exposome, human health, and unmet needs: a 2022 update with special focus on allergy
10.1111/all.15483 · 2022 · External reference
A meta-analysis of global fungal distribution reveals climate-driven patterns
10.1038/s41467-019-13164-8 · 2019 · External reference
The air mycobiome is decoupled from the soil mycobiome in the California San Joaquin Valley
10.1111/mec.16640 · 2022 · External reference
Can abundance of protists be inferred from sequence data: a case study of foraminifera
10.1371/journal.pone.0056739 · 2013 · External reference
Biodiversity and biogeography of the atmosphere
10.1098/rstb.2010.0283 · 2010 · External reference
Taxonomic diversity of fungi deposited from the atmosphere
10.1038/s41396-018-0160-7 · 2018 · External reference
WHO fungal priority pathogens list to guide research, development and public health action
2022 · External reference
Characterization of airborne bacteria and fungi at a land-sea transition site in Southern China
10.1016/j.scitotenv.2022.157786 · 2022 · External reference
Airborne observations of bioaerosol over the Southeast United States using a wideband integrated bioaerosol sensor
10.1002/2015jd024669 · 2016 · External reference
