OMSim: a simulator for optical map data
10.1093/bioinformatics/btx293 · doi-reference
Goodbye reference, hello genome graphs
10.1038/s41587-019-0199-7 · doi-reference
Fast and accurate genomic analyses using genome graphs
10.1038/s41588-018-0316-4 · doi-reference
Current strategies of polyploid plant genome sequence assembly
10.3389/fpls.2018.01660 · doi-reference
High-throughput single-molecule telomere characterization
10.1101/gr.222422.117 · doi-reference
Long-read single-molecule maps of the functional methylome
10.1101/gr.240739.118 · doi-reference
Epigenetic Optical Mapping of 5-Hydroxymethylcytosine in Nanochannel Arrays
10.1021/acsnano.8b03023 · doi-reference
Optical mapping discerns genome wide DNA methylation profiles
10.1186/1471-2199-9-68 · doi-reference
Sequence-specific fluorescent labeling of double-stranded DNA observed at the single molecule level
10.1093/nar/gng125 · doi-reference
Assembly and diploid architecture of an individual human genome via single-molecule technologies
10.1038/nmeth.3454 · doi-reference
Comparative genomics as a tool to understand evolution and disease
10.1101/gr.157503.113 · doi-reference
Haplotype phasing: Existing methods and new developments
10.1038/nrg3054 · doi-reference
Optical mapping as a routine tool for bacterial genome sequence finishing
10.1186/1471-2164-8-321 · doi-reference
Lateral genetic transfer and the construction of genetic exchange communities
10.1111/j.1574-6976.2010.00261.x · doi-reference
10.1126/science.aar6343
10.1126/science.aar6343 · doi-reference
Genome maps across 26 human populations reveal population-specific patterns of structural variation
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10.1038/nbt.4318
10.1038/nbt.4318 · doi-reference
Reassessment of the evolution of wheat chromosomes 4A, 5A, and 7B
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De novo assembly of a Chinese soybean genome
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Construction and comparison of three reference-quality genome assemblies for soybean
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Improved maize reference genome with single-molecule technologies
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Optical nano-mapping and analysis of plant genomes
10.1007/978-1-4939-3622-9_9 · doi-reference
A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II system
10.1093/gigascience/giz122 · doi-reference
High-coverage sequencing and annotated assemblies of the budgerigar genome
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Accurate detection of chimeric contigs via Bionano optical maps
10.1093/bioinformatics/bty850 · doi-reference
10.1007/978-3-319-38782-6_6
10.1007/978-3-319-38782-6_6 · doi-reference
Aligning optical maps to de Bruijn graphs
10.1093/bioinformatics/btz069 · doi-reference
Novo&Stitch: Accurate reconciliation of genome assemblies via optical maps
10.1093/bioinformatics/bty255 · doi-reference
10.1093/bioinformatics/btx437
10.1093/bioinformatics/btx437 · doi-reference
BioNanoAnalyst: a visualisation tool to assess genome assembly quality using BioNano data
10.1186/s12859-017-1735-4 · doi-reference
MapOptics: A light-weight, cross-platform visualization tool for optical mapping alignment
10.1093/bioinformatics/bty1013 · doi-reference
runBNG: A software package for BioNano genomic analysis on the command line
10.1093/bioinformatics/btx366 · doi-reference
Next-generation mapping: A novel approach for detection of pathogenic structural variants with a potential utility in clinical diagnosis
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An algorithm for assembly of ordered restriction maps from single DNA molecules
10.1073/pnas.0604040103 · doi-reference
Genomics via optical mapping II: Ordered restriction maps
10.1089/cmb.1997.4.91 · doi-reference
10.1109/bibm.2017.8217958
10.1109/bibm.2017.8217958 · doi-reference
An Eulerian path approach to DNA fragment assembly
10.1073/pnas.171285098 · doi-reference
Toward Simplifying and Accurately Formulating Fragment Assembly
10.1089/cmb.1995.2.275 · doi-reference
Genomic mapping by fingerprinting random clones: A mathematical analysis
10.1016/0888-7543(88)90007-9 · doi-reference
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
10.1093/nar/gkh340 · doi-reference
