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SUPERFAMILY, HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments
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CATH: an expanded resource to predict protein function through structure and sequence
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Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains
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webPRC: the Profile Comparer for alignment-based searching of public domain databases
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SSAP: sequential structure alignment program for protein structure comparison
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[21] progressive alignment of amino acid sequences and construction of phylogenetic trees from them
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ProRule: a new database containing functional and structural information on PROSITE profiles
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New and continuing developments at PROSITE
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PROSITE: a documented database using patterns and profiles as motif descriptors
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Activities at the universal protein resource (UniProt)
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Protein structural domain identification
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Global fold determination from a small number of distance restraints
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Folding polypeptide α-carbon backbones by distance geometry methods
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Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM
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Protein domain decomposition using a graph-theoretic approach
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Extending protein domain boundary predictors to detect discontinuous domains
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FUpred: detecting protein domains through deep-learning based contact map prediction
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ThreaDomEx: a unified platform for predicting continuous and discontinuous protein domains by multiple-threading and segment assembly
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