Abstract
Laura Aliisa Saarimäki, Giusy del Giudice, Luca Cattelani, Omar Laurino, Veer Singh Marwah, Pia Kinaret, Dario Greco
Abstract
Authors
Institutions
No local citing links have been materialized yet.
Integrating toxicogenomics into human health risk assessment: lessons learned from the benzo [a] pyrene case study
10.3109/10408444.2014.973935 · 2015
10.3390/nano10040750
10.3390/nano10040750
Transcriptomics in toxicogenomics, part ii: preprocessing and differential expression analysis for high quality data
10.3390/nano10050903 · 2020
10.3390/nano10040708
10.3390/nano10040708
Toxicogenomics analysis of dynamic dose-response in macrophages highlights molecular alterations relevant for multi-walled carbon nanotube-induced lung fibrosis
10.1016/j.impact.2020.100274 · 2020
INSIdE NANO: a systems biology framework to contextualize the mechanism-of-action of engineered nanomaterials
10.1038/s41598-018-37411-y · 2019
10.1093/bib/bbaa417
10.1093/bib/bbaa417
Integration of genome-wide mRNA and miRNA expression, and DNA methylation data of three cell lines exposed to ten carbon nanomaterials
10.1016/j.dib.2018.05.107 · 2018
Covid-19 acute responses and possible long term consequences: What nanotoxicology can teach us
10.1016/j.nantod.2020.100945 · 2020
Provenance
crossref
Confidence 100%
pubmed
Confidence 98%
europepmc
Confidence 96%
unpaywall
Confidence 95%
openalex
Confidence 95%
doaj
Confidence 92%
datacite
Confidence 0%
Bmdx: a graphical shiny application to perform benchmark dose analysis for transcriptomics data
10.1093/bioinformatics/btaa030 · 2020
BMDExpress 2: enhanced transcriptomic dose-response analysis workflow
10.1093/bioinformatics/bty878 · 2019
Tindermix: Time-dose integrated modelling of toxicogenomics data
10.1093/gigascience/giaa055 · 2020
10.1038/sdata.2016.18
10.1038/sdata.2016.18
eutopia: solution for omics data preprocessing and analysis
10.1186/s13029-019-0071-7 · 2019
Funmappone: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments
10.1186/s12859-019-2639-2 · 2019
Inform: Inference of network response modules
10.1093/bioinformatics/bty063 · 2018
Mvda: a multi-view genomic data integration methodology
10.1186/s12859-015-0680-3 · 2015
A multi-view genomic data simulator
10.1186/s12859-015-0577-1 · 2015
10.1371/journal.pone.0107801
10.1371/journal.pone.0107801
Feature set optimization in biomarker discovery from genome-scale data
10.1093/bioinformatics/btaa144 · 2020
10.1093/bioinformatics/btz521
10.1093/bioinformatics/btz521
An integrated quantitative structure and mechanism of action-activity relationship model of human serum albumin binding
10.1186/s13321-019-0359-2 · 2019
Computationally prioritized drugs inhibit sars-cov-2 infection and syncytia formation
10.1093/bib/bbab507 · 2022
Molecular signature of asthma-enhanced sensitivity to cuo nanoparticle aerosols from 3d cell model
10.1021/acsnano.9b01823 · 2019
Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials
10.1038/s41597-021-00808-y · 2021
10.1111/all.14606
10.1111/all.14606
Toxicogenomic profiling of 28 nanomaterials in mouse airways
10.1002/advs.202004588 · 2021
Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients
10.1038/s41597-020-00696-8 · 2020
10.1111/all.14519
10.1111/all.14519
Mechanistic similarities between 3d human bronchial epithelium and mice lung, exposed to copper oxide nanoparticles, support non-animal methods for hazard assessment
10.1002/smll.202000527 · 2020
10.1016/j.csbj.2020.02.023
10.1016/j.csbj.2020.02.023
10.1016/j.jaci.2020.06.012
10.1016/j.jaci.2020.06.012
Toward rigorous materials production: new approach methodologies have extensive potential to improve current safety assessment practices
10.1002/smll.201904749 · 2020
Transcriptomic profiling of adult-onset asthma related to damp and moldy buildings and idiopathic environmental intolerance
10.3390/ijms221910679 · 2021
Bioinformatics-assisted, integrated omics studies on medicinal plants
10.1093/bib/bbz132 · 2020
Volta: adVanced mOLecular neTwork analysis
10.1093/bioinformatics/btab642 · 2021
Ageing-associated changes in the expression of lncrnas in human tissues reflect a transcriptional modulation in ageing pathways
10.1016/j.mad.2019.111177 · 2020
Multiparametric profiling of engineered nanomaterials: Unmasking the surface coating effect
10.1002/advs.202002221 · 2020
Changes in microbial communities and their predictive functionalities during fermentation of toddy, an alcoholic beverage of india
10.1016/j.micres.2021.126769 · 2021
Multi-walled carbon nanotubes elicit concordant changes in dna methylation and gene expression following long-term pulmonary exposure in mice
10.1016/j.carbon.2021.03.045 · 2021
10.2217/14622416.7.7.1025
10.2217/14622416.7.7.1025 · doi-reference
Open tg-gates: a large-scale toxicogenomics database
10.1093/nar/gku955 · doi-reference
10.1021/nn305567s
10.1021/nn305567s · doi-reference
10.1016/j.nano.2011.11.004
10.1016/j.nano.2011.11.004 · doi-reference
10.1021/nn200595c
10.1021/nn200595c · doi-reference
10.1021/nn2033055
10.1021/nn2033055 · doi-reference
10.1021/la400561t
10.1021/la400561t · doi-reference
Basic biology and role of interleukin-17 in immunity and inflammation
10.1111/prd.12083 · doi-reference
Multiwalled carbon nanotubes induce a fibrogenic response by stimulating reactive oxygen species production, activating nf-kb signaling, and promoting fibroblast-to-myofibroblast transformation
10.1021/tx200351d · doi-reference
Network analysis reveals similar transcriptomic responses to intrinsic properties of carbon nanomaterials in vitro and in vivo
10.1021/acsnano.6b08650 · doi-reference
10.1007/978-1-0716-1839-4_11
10.1007/978-1-0716-1839-4_11 · doi-reference
A method to integrate benchmark dose estimates with genomic data to assess the functional effects of chemical exposure
10.1093/toxsci/kfm092 · doi-reference
Reply to: Prospects and challenges for FAIR toxicogenomics data
10.1038/s41565-021-01050-8 · doi-reference
Prospects and challenges for FAIR toxicogenomics data
10.1038/s41565-021-01049-1 · doi-reference
Towards FAIR nanosafety data
10.1038/s41565-021-00911-6 · doi-reference
10.1609/icwsm.v3i1.13937
10.1609/icwsm.v3i1.13937 · doi-reference
10.1101/gr.1239303
10.1101/gr.1239303 · doi-reference
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
10.1093/nar/gkaa1074 · doi-reference
PathwAX: a web server for network crosstalk based pathway annotation
10.1093/nar/gkw356 · doi-reference
10.1093/nar/gkz401
10.1093/nar/gkz401 · doi-reference
10.32614/cran.package.uwot
10.32614/cran.package.uwot · doi-reference
10.1038/ng1201-365
10.1038/ng1201-365 · doi-reference
Grouping of nanomaterials to read-across hazard endpoints: a review
10.1080/17435390.2018.1506060 · doi-reference
10.1371/journal.pcbi.1007677
10.1371/journal.pcbi.1007677 · doi-reference
Data integration in genomics and systems biology
10.1109/cec.2016.7743934 · doi-reference
Fastbmd: an online tool for rapid benchmark dose–response analysis of transcriptomics data
10.1093/bioinformatics/btaa700 · doi-reference
Multi-omics analysis of ten carbon nanomaterials effects highlights cell type specific patterns of molecular regulation and adaptation
10.1016/j.impact.2018.05.003 · doi-reference
10.1023/a:1010933404324
10.1023/a:1010933404324 · doi-reference
Map and model–moving from observation to prediction in toxicogenomics
10.1093/gigascience/giz057 · doi-reference
Wisdom of crowds for robust gene network inference
10.1038/nmeth.2016 · doi-reference
Topklists: a comprehensive r package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists
10.1515/sagmb-2014-0093 · doi-reference
10.1038/75556
10.1038/75556 · doi-reference
KEGG as a reference resource for gene and protein annotation
10.1093/nar/gkv1070 · doi-reference
The reactome pathway knowledgebase
10.1093/nar/gkv1351 · doi-reference
10.1093/nar/gkm226
10.1093/nar/gkm226 · doi-reference
10.1080/17460441.2021.1867095
10.1080/17460441.2021.1867095 · doi-reference
Cobalt nanoparticles trigger ferroptosis-like cell death (oxytosis) in neuronal cells: Potential implications for neurodegenerative disease
10.1096/fj.201902191rr · doi-reference
10.1073/pnas.2009192117
10.1073/pnas.2009192117 · doi-reference
Knowledge generation with rule induction in cancer omics
10.3390/ijms21010018 · doi-reference
10.3390/genes10020087
10.3390/genes10020087 · doi-reference