The need for standards and certification for investigative genetic genealogy, and a notice of action
10.1016/j.forsciint.2022.111495 · doi-reference
Regulating forensic genetic genealogy
10.1126/science.abj5724 · doi-reference
Privacy and genetic genealogy data
10.1126/science.aav0330 · doi-reference
ANGSD: analysis of next generation sequencing data
10.1186/s12859-014-0356-4 · doi-reference
Nuclear and mitochondrial genetic variants associated with mitochondrial DNA copy number
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Evaluating genotype imputation pipeline for ultra-low coverage ancient genomes
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Evaluating the impact of dropout and genotyping error on SNP-based kinship analysis with forensic samples
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Maximum-likelihood estimation of recent shared ancestry (ERSA)
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Relationship inference with low-coverage whole genome sequencing on forensic samples
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Genotype imputation from large reference panels
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A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
10.1093/bioinformatics/btr509 · doi-reference
Mapping short DNA sequencing reads and calling variants using mapping quality scores
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Genotype calling from population-genomic sequencing data
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Welcome to the Tidyverse
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HTSlib: C library for reading/writing high-throughput sequencing data
10.1093/gigascience/giab007 · doi-reference
Numt identification and removal with RtN!
10.1093/bioinformatics/btaa642 · doi-reference
Visualization of shared genomic regions and meiotic recombination in high-density SNP data
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Rapid, phase-free detection of long identity-by-descent segments enables effective relationship classification
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AKT: ancestry and kinship toolkit
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Robust relationship inference in genome-wide association studies
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Developmental validation of a whole genome sequencing workflow for use in a forensic laboratory
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Optimizing hard cutoff quality control metrics for IBD segment inference and genotyping accuracy in low-coverage sequencing data
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A harmonized public resource of deeply sequenced diverse human genomes
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Bioinformatic processing of whole genome sequencing data with Tapir
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Twelve years of SAMtools and BCFtools
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High-coverage whole-genome sequencing of the expanded 1000 genomes project cohort including 602 trios
10.1016/j.cell.2022.08.004 · doi-reference
DNA profile match probability calculation: how to allow for population stratification, relatedness, database selection and single bands
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Characterizing DNA mixtures with demixtify
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ClusIBD: robust detection of identity-by-descent segments using unphased genetic data from poor-quality samples
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Accurate detection of identity-by-descent segments in human ancient DNA
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A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals
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Efficient phasing and imputation of low-coverage sequencing data using large reference panels
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Imputation of low-coverage sequencing data from 150,119 UK Biobank genomes
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A genotype likelihood function for DNA mixtures
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Correcting for sample contamination in genotype calling of DNA sequence data
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Decomposition of individual SNP patterns from Mixed DNA Samples
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MixDeR: A SNP mixture deconvolution workflow for forensic genetic genealogy
10.1016/j.fsigen.2025.103224 · doi-reference
EFMex: using EuroForMix to evaluate DNA mixtures with multiple persons of interest
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Developmental validation of STRmix™ NGS, a probabilistic genotyping tool for the interpretation of autosomal STRs from forensic profiles generated using NGS
10.1016/j.fsigen.2022.102804 · doi-reference
CHARR efficiently estimates contamination from DNA sequencing data
10.1016/j.ajhg.2023.10.011 · doi-reference
