Asian diversity in human immune cells
10.1016/j.cell.2025.02.017 · doi-reference
Cell Taxonomy: a curated repository of cell types with multifaceted characterization
10.1093/nar/gkac816 · doi-reference
variancePartition: interpreting drivers of variation in complex gene expression studies
10.1186/s12859-016-1323-z · doi-reference
Accurate and fast cell marker gene identification with COSG
10.1093/bib/bbab579 · doi-reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · doi-reference
A practical handbook on single-cell RNA sequencing data quality control and downstream analysis
10.1016/j.mocell.2024.100103 · doi-reference
Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods
10.1186/s13059-024-03224-8 · doi-reference
Benchmarking Computational Doublet-Detection Methods for Single-Cell RNA Sequencing Data
10.1016/j.cels.2020.11.008 · doi-reference
Protocol for executing and benchmarking eight computational doublet-detection methods in single-cell RNA sequencing data analysis
10.1016/j.xpro.2021.100699 · doi-reference
Parallel immunizations of rabbits using the same antigen yield antibodies with similar, but not identical, epitopes
10.1371/journal.pone.0045817 · doi-reference
Quantifying batch effects for individual genes in single-cell data
10.1038/s43588-025-00824-7 · doi-reference
DISCO: a database of Deeply Integrated human Single-Cell Omics data
10.1093/nar/gkab1020 · doi-reference
Fully-automated and ultra-fast cell-type identification using specific marker combinations from single-cell transcriptomic data
10.1038/s41467-022-28803-w · doi-reference
A spatially resolved single-cell genomic atlas of the adult human breast
10.1038/s41586-023-06252-9 · doi-reference
Dictionary learning for integrative, multimodal and scalable single-cell analysis
10.1038/s41587-023-01767-y · doi-reference
Integrated analysis of multimodal single-cell data
10.1016/j.cell.2021.04.048 · doi-reference
scQCEA: a framework for annotation and quality control report of single-cell RNA-sequencing data
10.1186/s12864-023-09447-6 · doi-reference
Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data
10.1038/s41467-022-29212-9 · doi-reference
Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender
10.1038/s41592-023-01943-7 · doi-reference
scRepertoire: An R-based toolkit for single-cell immune receptor analysis
10.12688/f1000research.22139.1 · doi-reference
scds: computational annotation of doublets in single-cell RNA sequencing data
10.1093/bioinformatics/btz698 · doi-reference
Decontamination of ambient RNA in single-cell RNA-seq with DecontX
10.1186/s13059-020-1950-6 · doi-reference
