The FAIR Guiding Principles for scientific data management and stewardship
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Next-generation genome annotation: we still struggle to get it right
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Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
10.1186/s13059-020-02134-9 · doi-reference
Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C
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GraphUnzip: unzipping assembly graphs with long reads and Hi-CGraphUnzip: unzipping as- sembly graphs with long reads and Hi-C
10.1101/2021.01.29.428779 · doi-reference
Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data
10.1038/s41477-019-0487-8 · doi-reference
Ratatosk: hybrid error correction of long reads enables accurate variant calling and assembly
10.1186/s13059-020-02244-4 · doi-reference
Haplotype-resolved genome analyses of a heterozygous diploid potato
10.1038/s41588-020-0699-x · doi-reference
Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads
10.1038/s41587-020-0719-5 · doi-reference
Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions
10.1038/s41467-019-09575-2 · doi-reference
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads
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HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
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De novo assembly of haplotype-resolved genomes with trio binning
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Unzipping haplotypes in diploid and polyploid genomes
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No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini
10.1073/pnas.1600338113 · doi-reference
Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade
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BlobToolKit – Interactive Quality Assessment of Genome Assemblies
10.1534/g3.119.400908 · doi-reference
BlobTools: Interrogation of genome assemblies
10.12688/f1000research.12232.1 · doi-reference
Factorial estimating assembly base errors using k-mer abundance difference (KAD) between short reads and genome assembled sequences
10.1093/nargab/lqaa075 · doi-reference
A chromosomal-level genome assembly for the giant African snail Achatina fulica
10.1093/gigascience/giz124 · doi-reference
QUAST: quality assessment tool for genome assemblies
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Mapping-based genome size estimationMapping-based genome size estimation
10.1101/607390 · doi-reference
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
10.1093/bioinformatics/btw663 · doi-reference
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
10.1038/s41467-020-14998-3 · doi-reference
First estimates of genome size in ribbon worms (phylum Nemertea) using flow cytometry and Feulgen image analysis densitometry
10.1139/cjz-2014-0068 · doi-reference
Efficient hybrid de novo assembly of human genomes with WENGAN
10.1038/s41587-020-00747-w · doi-reference
The MaSuRCA genome assembler
10.1093/bioinformatics/btt476 · doi-reference
HASLR: Fast Hybrid Assembly of Long Reads
10.1016/j.isci.2020.101389 · doi-reference
Acoel genome reveals the regulatory landscape of whole-body regeneration
10.1126/science.aau6173 · doi-reference
Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri
10.1038/s41467-020-17397-w · doi-reference
High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing
10.1093/gigascience/giz108 · doi-reference
Chromosome‐level reference genome of X12, a highly virulent race of the soybean cyst nematode Heterodera glycines
10.1111/1755-0998.13068 · doi-reference
Chromosome-Level Assembly of the Caenorhabditis remanei Genome Reveals Conserved Patterns of Nematode Genome Organization
10.1534/genetics.119.303018 · doi-reference
Comparative analysis of the Mercenaria mercenaria genome provides insights into the diversity of transposable elements and immune molecules in bivalve mollusks
10.1186/s12864-021-08262-1 · doi-reference
The Scaly-foot Snail genome and implications for the origins of biomineralised armour
10.1038/s41467-020-15522-3 · doi-reference
Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C
10.1093/gigascience/giz067 · doi-reference
An initial comparative genomic autopsy of wasting disease in sea stars
10.1111/mec.15386 · doi-reference
Chromosomal-Level Genome Assembly of the Sea Urchin Lytechinus variegatus Substantially Improves Functional Genomic Analyses
10.1093/gbe/evaa101 · doi-reference
Chromosome-level reference genome of the jellyfish Rhopilema esculentum
10.1093/gigascience/giaa036 · doi-reference
Lineage dynamics of the endosymbiotic cell type in the soft coral Xenia
10.1038/s41586-020-2385-7 · doi-reference
