Journal

PLOS Computational Biology

1553-7358 · Public Library of Science (PLoS)

221 verified public works

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HiFIseek: Gene-specific enrichment of high-impact mutations in associated genomic regions

2026 · 0 citations

CardamomOT: A mechanistic optimal transport-based framework for gene regulatory network inference, trajectory reconstruction and generative modeling

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Repurposing ritonavir to induce proteasomal degradation of IE1 for inhibition of human cytomegalovirus replication

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Omics data discovery agents: Agent-supported retrieval, reanalysis, and synthesis of published omics data

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Spatial Transcriptomics As Rasterized Image Tensors (STARIT) characterizes cell states with subcellular molecular heterogeneity

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Mobility hinders malaria elimination goals in the Brazilian Amazon

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DeCTCF: Decoding CTCF binding sequences by leveraging predicted epigenomic features

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Bioactivity-driven prediction of antibacterial synergy using machine learning models

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A generalized scaling law reveals synchrony-driven reorganization of brain dynamics across human lifespan

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A graph-attentive GAN for rare-cell-aware single-cell RNA-seq data generation

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Robust prediction of drug combination side effects in realistic settings

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Spatially resolved reaction–diffusion modeling reveals effects of intracellular spatial heterogeneity on yeast galactose network dynamics

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Quantifying antibiotic susceptibility and inoculum effects using transient dynamics of Pseudomonas aeruginosa

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Machine learning and Voronoi-based decision boundaries for Bacterial vaginosis to determine population- specific microbial interactions

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Effects of spatial constraints of inhibitory connectivity on the dynamical development of criticality in spiking networks

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Demographic changes and behavioural responses shape vulnerability to infectious disease outbreaks

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PEtab Select: Specification standard and supporting software for automated model selection

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Generative diffusion models for spatiotemporal influenza forecasting

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Mixed updating in structured populations

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Modelling vasopressin synthesis and storage dynamics during prolonged osmotic challenge and recovery based on activity dependent upregulation of mRNA transcription

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GeoEPred: A multimodal structure-aware geometric deep learning framework for Gram-negative bacterial secreted effector prediction with sequence semantics

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Context-dependent feature modulation shapes human decision policies in approach–avoidance conflicts

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Granger sensori-behavioral functional taxonomy of neuronal ensemble activity from two-photon calcium imaging data

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Modeling decision dynamics disentangles working memory, cognitive control and reinforcement learning and reveals clinical differences

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Twelve quick tips for designing AI-driven HPC workflows

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Data-driven modeling of spatiotemporal dynamics using multimodal imaging data

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Response to comment on “Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper”

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Balanced contractility and adhesion drive polarization in a minimal elastic actomyosin network

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Direct microhaplotype genotyping for GT-seq (Genotyping-in-Thousands by Sequencing) using a diploid abundance model

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Integrative AI-assisted modeling suggests CPPF binding at a composite α/β-tubulin interface pocket dominated by β-tubulin contacts

2026 · 0 citations