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References from Next generation sequencing technologies to explore the diversity of germplasm resources: Achievements and trends in tomato. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
External reference
Tomato (Solanum lycopersicum L.) in the service of bio-technology
10.1007/s11240-014-0664-4 · 2015 · External reference
10.1093/genetics/132.4.1141
10.1093/genetics/132.4.1141 · External reference
An integrated high-density RFLP-AFLP map of tomato based on two Lycopersicon esculentum× L. pennellii F2 populations
10.1007/s001220051231 · 1999 · External reference
Advanced backcross QTL analysis in tomato. I. Identification of QTLs for traits of agronomic importance from Lycopersicon hirsutum
10.1007/s001220050908 · 1998 · External reference
10.1111/tpj.14152
10.1111/tpj.14152 · External reference
10.1038/nature11119
10.1038/nature11119 · External reference
10.1093/hmg/ddq416
10.1093/hmg/ddq416 · External reference
10.1155/2018/4170432
10.1155/2018/4170432 · External reference
10.1371/journal.pone.0003376
10.1371/journal.pone.0003376 · External reference
10.1371/journal.pone.0019379
10.1371/journal.pone.0019379 · External reference
Spotlight on Solanaceae metabolism: biotechnological application
10.3389/fpls.2021.756948 · 2021 · External reference
Morphological characterization and relationships of wild tomatoes (Solanum L. Sect Lycopersicon)
2005 · External reference
Taxonomy of wild tomatoes and their relatives (Solanum sections Lycopersicoides, Juglandifolia, Lycopersicon; Solanaceae)
2008 · External reference
10.1007/978-3-642-20450-0_9
10.1007/978-3-642-20450-0_9 · 2011 · External reference
Evolution of mating systems inLycopersicon hirsutum as deduced from genetic variation in electrophoretic and morphological characters
10.1007/bf00982390 · 1979 · External reference
10.1038/nrg3605
10.1038/nrg3605 · External reference
Domestication and breeding of tomatoes: what have we gained and what can we gain in the future?
10.1093/aob/mcm150 · 2007 · External reference
10.1079/9780851993966.0001
10.1079/9780851993966.0001 · External reference
Tomato (Solanum lycopersicum L.) in the service of biotechnology
10.1007/s11240-014-0664-4 · 2015 · External reference
Global trends and challenges to food and agriculture into the 21st century
10.1016/b978-0-12-812134-4.00002-9 · 2019 · External reference
10.17660/actahortic.2015.1101.26
10.17660/actahortic.2015.1101.26 · External reference
Unresolved reference
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Unresolved reference
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Unresolved reference
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Unresolved reference
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Unresolved reference
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Unresolved reference
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10.1073/pnas.74.12.5463
10.1073/pnas.74.12.5463 · 1977 · External reference
Evaluation and validation of the ABI 3700, ABI 3100, and the MegaBACE 1000 capillary array electrophoresis instruments for use with short tandem repeat microsatellite typing in a forensic environment
10.1002/elps.200305976 · 2004 · External reference
10.1038/265687a0
10.1038/265687a0 · External reference
10.1126/science.274.5287.546
10.1126/science.274.5287.546 · External reference
10.1073/pnas.061029298
10.1073/pnas.061029298 · External reference
10.1126/science.2047873
10.1126/science.2047873 · External reference
Assessment of genetic variation in Bulgarian tomato (Solanum lycopersicum L.) genotypes, using fluorescent SSR genotyping platform
10.1080/13102818.2014.901683 · 2014 · External reference
Genetic diversity and population structure of Asian tomato accessions based on simple-sequence repeats
10.9787/pbb.2016.4.3.306 · 2016 · External reference
A clarified position for Solanum lycopersicum var. cerasiforme in the evolutionary history of tomatoes (Solanaceae)
10.1186/1471-2229-8-130 · 2008 · External reference
Biochemical characterisation and genetic structure provide insight into the diversity of the Mediterranean Tomato Ancient Varieties ‘San Marzano’ and ‘Re Fiascone’: new resources for breeding
10.3390/agronomy12010018 · 2022 · External reference
Next-generation sequencing accelerates crop gene discovery
10.1016/j.tplants.2018.11.008 · 2019 · External reference
Next-generation sequencing technologies: An overview
10.1016/j.humimm.2021.02.012 · 2021 · External reference
Overview of next-generation sequencing technologies
10.1002/cpmb.59 · 2018 · External reference
Torrents of sequence
10.1038/nmeth.f.330 · 2011 · External reference
10.1002/0471142727.mb0705s96
10.1002/0471142727.mb0705s96 · External reference
10.1093/nar/gkm760
10.1093/nar/gkm760 · External reference
Palindromic sequence impedes sequencing-by-ligation mechanism
10.1186/1752-0509-6-s2-s10 · 2012 · External reference
Addressing challenges in the production and analysis of illumina sequencing data
10.1186/1471-2164-12-382 · 2011 · External reference
10.1016/j.bbadis.2014.06.015
10.1016/j.bbadis.2014.06.015 · External reference
10.1038/nature10242
10.1038/nature10242 · External reference
10.1038/s41592-019-0507-7
10.1038/s41592-019-0507-7 · External reference
10.1080/14772000.2015.1099575
10.1080/14772000.2015.1099575 · External reference
10.1186/gb-2013-14-6-405
10.1186/gb-2013-14-6-405 · External reference
The third-generation sequencing: the advanced approach to genetic diseases
10.21037/tp.2020.03.06 · 2020 · External reference
10.1007/s13577-017-0168-8
10.1007/s13577-017-0168-8 · External reference
10.1016/j.gpb.2015.08.002
10.1016/j.gpb.2015.08.002 · External reference
10.1016/j.csbj.2020.07.018 · Admitted local publication
10.1016/j.tibs.2018.03.006
10.1016/j.tibs.2018.03.006 · External reference
10.1038/s41431-021-00917-7
10.1038/s41431-021-00917-7 · External reference
10.1093/biostatistics/kxl042
10.1093/biostatistics/kxl042 · External reference
10.1093/dnares/dst033
10.1093/dnares/dst033 · External reference
SNP genotyping reveals genetic diversity between cultivated landraces and contemporary varieties of tomato
10.1186/1471-2164-14-835 · 2013 · External reference
10.1371/journal.pone.0040563
10.1371/journal.pone.0040563 · External reference
Single nucleotide polymorphism discovery in cultivated tomato via sequencing by synthesis
10.3835/plantgenome2011.12.0033 · 2012 · External reference
10.1371/journal.pone.0045520
10.1371/journal.pone.0045520 · External reference
Variation revealed by SNP genotyping and morphology provides insight into the origin of the tomato
10.1371/journal.pone.0048198 · 2012 · External reference
10.1104/pp.114.241521
10.1104/pp.114.241521 · External reference
Genomic variation in tomato, from wild ancestors to contemporary breeding accessions
10.1186/s12864-015-1444-1 · 2015 · External reference
Breeding has increased the diversity of cultivated tomato in The Netherlands
10.3389/fpls.2019.01606 · 2019 · External reference
Exploring a tomato landraces collection for fruit-related traits by the aid of a high-throughput genomic platform
10.1371/journal.pone.0137139 · 2015 · External reference
10.1007/s00122-017-2857-9
10.1007/s00122-017-2857-9 · External reference
An association mapping approach to identify favourable alleles for tomato fruit quality breeding
10.1186/s12870-014-0337-9 · 2014 · External reference
10.3390/genes11111278
10.3390/genes11111278 · External reference
A simulation-based breeding design that uses whole-genome prediction in tomato
10.1038/srep19454 · 2016 · External reference
Genome-wide association study identifies QTL for eight fruit traits in cultivated tomato (Solanum lycopersicum L.)
2021 · External reference
A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow
10.1186/s12859-017-2000-6 · 2017 · External reference
10.1038/nrg3012
10.1038/nrg3012 · External reference
Genotyping-by-sequencing for plant breeding and genetics
2012 · External reference
ddRAD sequencing-based genotyping for population structure analysis in cultivated tomato provides new insights into the genomic diversity of Mediterranean ‘da serbo’ type long shelf-life germplasm
10.1038/s41438-020-00353-6 · 2020 · External reference
10.1093/jxb/erac072
10.1093/jxb/erac072 · External reference
Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing
10.1186/1471-2164-14-11 · 2013 · External reference
10.1093/aob/mcz054
10.1093/aob/mcz054 · External reference
Single Primer Enrichment Technology (SPET) for high-throughput genotyping in tomato and eggplant germplasm
10.3389/fpls.2019.01005 · 2019 · External reference
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing
10.1111/tpj.12616 · 2014 · External reference
10.1038/ng.3117
10.1038/ng.3117 · External reference
Unresolved reference
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10.1186/1471-2164-14-791
10.1186/1471-2164-14-791 · External reference
10.1126/science.aal1556
10.1126/science.aal1556 · External reference
Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection
10.1038/s41438-020-0291-7 · 2020 · External reference
Genomic evidence for complex domestication history of the cultivated tomato in Latin America
10.1093/molbev/msz297 · 2020 · External reference
10.1038/s41588-019-0410-2
10.1038/s41588-019-0410-2 · External reference
Variation of presence/absence genes among Arabidopsis populations
10.1186/1471-2148-12-86 · 2012 · External reference
10.1038/s41467-020-19682-0
10.1038/s41467-020-19682-0 · External reference
De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing
10.1093/dnares/dsaa029 · 2021 · External reference
10.1111/tpj.15690
10.1111/tpj.15690 · External reference
A high-continuity and annotated tomato reference genome
10.1186/s12864-021-08212-x · 2021 · External reference
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity
2022 · External reference
10.1016/j.cell.2020.05.021
10.1016/j.cell.2020.05.021 · External reference
10.1073/pnas.0506758102
10.1073/pnas.0506758102 · External reference
How the pan-genome is changing crop genomics and improvement
10.1186/s13059-020-02224-8 · 2021 · External reference
10.1038/s41586-022-04808-9
10.1038/s41586-022-04808-9 · External reference
10.1038/ng.3046
10.1038/ng.3046 · External reference
10.1038/s41588-022-01099-8
10.1038/s41588-022-01099-8 · External reference
Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives
10.7717/peerj.793 · 2015 · External reference
Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions
10.1073/pnas.2104315118 · 2021 · External reference
