Abstract
No public abstract is available from the verified source records.
Pasquinna Sida, Michael Kinsella, David P. Scanlon
Abstract
Authors
Institutions
No ROR-resolved institution is linked to this work yet.
Provenance
crossref
Confidence 100%
pubmed
Confidence 98%
unpaywall
Confidence 95%
datacite
Confidence 0%
No local reference links have been materialized yet.
No local citing links have been materialized yet.
Illuminating the dark protein-protein interactome
2022
Affinity-purification coupled to mass spectrometry: basic principles and strategies
10.1002/pmic.201100523 · 2012
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome
10.1016/j.cell.2021.04.011 · 2021
A reference map of the human binary protein interactome
10.1038/s41586-020-2188-x · 2020
Transient protein-protein interactions
10.1093/protein/gzr025 · 2011
Meet the neighbors: mapping local protein interactomes by proximity-dependent labeling with BioID
10.1002/pmic.201600123 · 2016
Protein interaction network of the mammalian hippo pathway reveals mechanisms of kinase-phosphatase interactions
10.1126/scisignal.2004712 · 2013
Improving yeast two-hybrid screening systems
10.1093/bfgp/elm035 · 2008
A proximity-dependent biotinylation map of a human cell
10.1038/s41586-021-03592-2 · 2021
The development of proximity labeling technology and its applications in mammals, plants, and microorganisms
10.1186/s12964-023-01310-1 · 2023
Proximity dependent biotinylation: key enzymes and adaptation to proteomics approaches
10.1074/mcp.r120.001941 · 2020
A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells
10.1083/jcb.201112098 · 2012
An improved smaller biotin ligase for BioID proximity labeling
10.1091/mbc.e15-12-0844 · 2016
In planta proximity dependent biotin identification (BioID)
10.1038/s41598-018-27500-3 · 2018
Screening of proximal and interacting proteins in rice protoplasts by proximity-dependent biotinylation
10.3389/fpls.2017.00749 · 2017
Proximity-dependent biotin identification (BioID) in Dictyostelium amoebae
2016
Novel components of the Toxoplasma inner membrane complex revealed by BioID
10.1128/mbio.02357-14 · 2015
Capturing the Asc1p/receptor for activated C kinase 1 (RACK1) microenvironment at the head region of the 40S ribosome with quantitative BioID in yeast
10.1074/mcp.m116.066654 · 2017
Proximity-dependent biotinylation by TurboID to identify protein-protein interaction networks in yeast
10.1242/jcs.232249 · 2019
Efficient proximity labeling in living cells and organisms with TurboID
10.1038/nbt.4201 · 2018
Highly effective proximate labeling in Drosophila
2021
Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
10.1016/j.jbc.2021.101094 · 2021
A toolbox for efficient proximity-dependent Biotinylation in zebrafish embryos
10.1016/j.mcpro.2021.100128 · 2021
In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafish
10.7554/elife.64631 · 2021
Deconstructing sarcomeric structure–function relations in titin-BioID knock-in mice
10.1038/s41467-020-16929-8 · 2020
In vivo proximity proteomics of nascent synapses reveals a novel regulator of cytoskeleton-mediated synaptic maturation
10.1038/s41467-019-08288-w · 2019
Claudin-4 localization in epithelial ovarian cancer
10.1016/j.heliyon.2022.e10862 · 2022
Protein proximity networks and functional evaluation of the casein kinase 1 gamma family reveal unique roles for CK1γ3 in WNT signaling
10.1016/j.jbc.2022.101986 · 2022
A BioID-derived proximity interactome for SARS-CoV-2 proteins
10.3390/v14030611 · 2022
Proteomic analysis of the plasmodium berghei gametocyte egressome and vesicular bioID of osmiophilic body proteins identifies Merozoite TRAP-like protein (MTRAP) as an essential factor for parasite transmission
10.1074/mcp.m116.058263 · 2016
In vivo biotinylation of the Toxoplasma parasitophorous vacuole reveals novel dense granule proteins important for parasite growth and pathogenesis
10.1128/mbio.00808-16 · 2016
Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies
10.1016/j.celrep.2022.111678 · 2022
A proximity biotinylation-based approach to identify protein-E3 ligase interactions induced by PROTACs and molecular glues
10.1038/s41467-021-27818-z · 2022
Rice vitamins
2019
Mechanisms governing precise protein biotinylation
10.1016/j.tibs.2017.02.001 · 2017
Structure and function of biotin-dependent carboxylases
10.1007/s00018-012-1096-0 · 2013
Structural and functional studies of the biotin protein ligase from Aquifex aeolicus reveal a critical role for a conserved residue in target specificity
10.1016/j.jmb.2008.12.086 · 2009
Ligand specificity of group I biotin protein ligase of Mycobacterium tuberculosis
10.1371/journal.pone.0002320 · 2008
Crystal structures of biotin protein ligase from Pyrococcus horikoshii OT3 and its complexes: structural basis of biotin activation
10.1016/j.jmb.2005.08.032 · 2005
Nucleotide sequence of the birA gene encoding the biotin operon represser and biotin holoenzyme synthetase functions of Escherichia coli
10.1016/0378-1119(85)90011-3 · 1985
Luciferase complementation for cellular assays beyond protein–protein interactions
10.1007/s44211-025-00730-y · doi-reference
Proximity ligation assay for detecting protein-protein interactions and protein modifications in cells and tissues in situ
10.1002/cpcb.115 · doi-reference
An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations
10.1038/s41467-018-03523-2 · doi-reference
Combined proximity labeling and affinity purification−mass spectrometry workflow for mapping and visualizing protein interaction networks
10.1038/s41596-020-0365-x · doi-reference
ProHits-viz: a suite of web tools for visualizing interaction proteomics data
10.1038/nmeth.4330 · doi-reference
SAINTq: scoring protein-protein interactions in affinity purification – mass spectrometry experiments with fragment or peptide intensity data
10.1002/pmic.201500499 · doi-reference
SAINT: probabilistic scoring of affinity purification–mass spectrometry data
10.1038/nmeth.1541 · doi-reference
SAINTexpress: improvements and additional features in significance analysis of INTeractome software
10.1016/j.jprot.2013.10.023 · doi-reference
Overcoming analytical challenges in proximity labeling proteomics
10.1002/jms.5134 · doi-reference
Comparing SILAC- and stable isotope dimethyl-labeling approaches for quantitative proteomics
10.1021/pr500630a · doi-reference
Thiol-cleavable biotin for chemical and enzymatic biotinylation and its application to mitochondrial TurboID proteomics
10.1021/jasms.1c00079 · doi-reference
Directed evolution of the substrate specificity of biotin ligase
10.1002/bit.25176 · doi-reference
BioSITe: a method for direct detection and quantitation of site-specific biotinylation
10.1021/acs.jproteome.7b00775 · doi-reference
Antibodies to biotin enable large-scale detection of biotinylation sites on proteins
10.1038/nmeth.4465 · doi-reference
Structural origins of high-affinity biotin binding to streptavidin
10.1126/science.2911722 · doi-reference
Control of TurboID-dependent biotinylation intensity in proximity ligation screens
10.1016/j.jprot.2023.104886 · doi-reference
The CRAPome: a contaminant repository for affinity purification–mass spectrometry data
10.1038/nmeth.2557 · doi-reference
Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes
10.1016/j.jprot.2014.09.011 · doi-reference
Integrating endogenous TurboID and data-independent acquisition mass spectrometry for in vivo proximity labeling
10.1038/s44318-025-00660-5 · doi-reference
When less is more – a fast TurboID knock-in approach for high-sensitivity endogenous interactome mapping
10.1242/jcs.261952 · doi-reference
Identifying protein-protein interactions by proximity Biotinylation with AirID and splitAirID
10.1002/cpz1.702 · doi-reference
In vivo profiling of the Alk Proximitome in the developing Drosophila brain
10.1016/j.jmb.2021.167282 · doi-reference
Proximity labeling in mammalian cells with TurboID and split-TurboID
10.1038/s41596-020-0399-0 · doi-reference
A novel class of ER membrane proteins regulates ER-associated endosome fission
10.1016/j.cell.2018.08.030 · doi-reference
ChromID identifies the protein interactome at chromatin marks
10.1038/s41587-020-0434-2 · doi-reference
RNA-protein interaction analysis of SARS-CoV-2 5′ and 3′ untranslated regions reveals a role of lysosome-associated membrane protein-2a during viral infection
10.1128/msystems.00643-21 · doi-reference
The wing of a winged Helix-turn-helix transcription factor organizes the active site of BirA, a bifunctional repressor/ligase
10.1074/jbc.m113.525618 · doi-reference
Evidence for Interdomain interaction in the Escherichia coli repressor of biotin biosynthesis from studies of an N-terminal domain deletion mutant
10.1021/bi952269e · doi-reference
Successful conversion of the Bacillus subtilis BirA group II biotin protein ligase into a group I ligase
10.1371/journal.pone.0096757 · doi-reference
Evidence for reassociation of RNA-binding proteins after cell lysis: implications for the interpretation of immunoprecipitation analyses
10.1261/rna.7151404 · doi-reference
The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation
10.1126/science.1251456 · doi-reference
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
10.1016/j.cell.2012.04.031 · doi-reference
Split-BioID a conditional proteomics approach to monitor the composition of spatiotemporally defined protein complexes
10.1038/ncomms15690 · doi-reference
Split-BioID: a proximity biotinylation assay for dimerization-dependent protein interactions
10.1002/1873-3468.12548 · doi-reference
Filling the void: proximity-based labeling of proteins in living cells
10.1016/j.tcb.2016.09.004 · doi-reference
Deciphering molecular interactions by proximity labeling
10.1038/s41592-020-01010-5 · doi-reference
Traversing the NPC along the pore membrane
10.4161/nucl.2.2.14637 · doi-reference
Diffusion and retention are major determinants of protein targeting to the inner nuclear membrane
10.1083/jcb.201409127 · doi-reference
AirID-based proximity labeling for protein-protein interaction in plants
10.3791/64428 · doi-reference
Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID
10.7554/elife.47864 · doi-reference