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Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
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Optimization of a duplex real-time PCR method for relative quantitation of infectious laryngotracheitis virus
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BEDTools: a flexible suite of utilities for comparing genomic features
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Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
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Molecular architecture of the chick vestibular hair bundle
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Ultrafast Peptide Label-Free Quantification with FlashLFQ
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Viral proteogenomic and expression profiling during productive replication of a skin-tropic herpesvirus in the natural host
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Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
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Near-optimal probabilistic RNA-seq quantification
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Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
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Expression of chicken parvovirus VP2 in chicken embryo fibroblasts requires codon optimization for production of naked DNA and vectored meleagrid herpesvirus type 1 vaccines
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Rapid protein-folding assay using green fluorescent protein
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A Novel Ultra-Stable, Monomeric Green Fluorescent Protein For Direct Volumetric Imaging of Whole Organs Using CLARITY
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UFBoot2: Improving the Ultrafast Bootstrap Approximation
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ModelFinder: fast model selection for accurate phylogenetic estimates
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
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MAFFT multiple sequence alignment software version 7: improvements in performance and usability
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PDBsum1: A standalone program for generating PDBsum analyses
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Nextflow enables reproducible computational workflows
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ColabFold: making protein folding accessible to all
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Highly accurate protein structure prediction with AlphaFold
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SignalP 6.0 predicts all five types of signal peptides using protein language models
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JPred4: a protein secondary structure prediction server
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Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
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Basic local alignment search tool
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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
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SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
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Bioconda: sustainable and comprehensive software distribution for the life sciences
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Evaluation of the protection elicited by direct and indirect exposure to live attenuated infectious laryngotracheitis virus vaccines against a recent challenge strain from the United States
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Replication and transmission of live attenuated infectious laryngotracheitis virus (ILTV) vaccines
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Pathogenicity and growth characteristics of selected infectious laryngotracheitis virus strains from the United States
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Molecular and microscopic characterisation of a novel pathogenic herpesvirus from Indian ringneck parrots (Psittacula krameri)
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Intrahost speciations and host switches played an important role in the evolution of herpesviruses
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Topics in herpesvirus genomics and evolution
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Infectious laryngotracheitis herpesvirus expresses a related pair of unique nuclear proteins which are encoded by split genes located at the right end of the UL genome region
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Comparison of Immune-Related Gene Expression in Two Chicken Breeds Following Infectious Bronchitis Virus Vaccination
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IL-4: an important cytokine in determining the fate of T cells
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The interleukin-17 gene of herpesvirus saimiri
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Identification of novel viral interleukin-10 isoforms of human cytomegalovirus AD169
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